| Next Generation Sequencing (NGS): SOLiD System Sequencing Platform was applied to investigate the whole transcriptome of two hybrids (PTT06001H; H1 and PTT06008H: H2), two paternal lines (CK81; P1 and CK120; P2), and one maternal line (IR79156; M). The data sets were aligned against the reference, precisely, the total numbers of the individual rice panicles. Samples aligned with Nipponbare ranking from the highest were as follows, P2 (9,747,077 reads), H1 (7,386,061 reads), P1 (5,361,077 reads), H2 (5,196,982 reads), and M (2,244,306 reads), respectively. The differentially expressed genes (DEGs) were identified and found that 2902, 1604, 3168, 3068, 1171, and 3031 genes were up-regulated (> 2 fold) between M vs. H1, P1 vs. H1, M vs.P1, M vs. H2, P2 vs.... |
