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Visual FTBL Generator: Visual Generation Tool for 13C-FLUX File BABT
Yu,Guojun; Rui,Bin; Fan,Xinyue; Xie,Xiaoyao.
Abstract 13C metabolic flux analysis (13C-MFA) has achieved increasing significance in quantitative metabolic system analysis in recent years. In 13C metabolic flux analysis, 13C-FLUX software is a major analytical tool. The software’s input script is primarily expressed in textual form without visual presentation of the structure of the entire metabolic network, thus error-prone in manual input. To solve this problem, we have developed a visual FTBL generator (VFG, available at http://47.100.98.220/vfg/index.jsp in a Google or Firefox browser)for MFA that eliminates the tedious, error-prone text entry mode and provides a user-friendly graphical interface and simple visual reaction generation functions.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Metabolic network; Visualization; 13C-FLUX; Database.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132019000100610
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Structural and Functional Analysis of Giant Strong Component of Bacillus thuringiensis Metabolic Network BJM
Ding,D.W.; Ding,Y.R.; Li,L.N.; Cai,Y.J.; Xu,W.B..
The purpose of this work was to study the giant strong component (GSC) of B. thuringiensis metabolic network by structural and functional analysis. Based on so-called "bow tie" structure, we extracted and studied GSC with its functional significance. Global structural properties such as degree distribution and average path length were computed and indicated that the GSC is also a small-world and scale-free network. Furthermore, the GSC was decomposed and functional significant for metabolism of these divisions were investigated by comparing to KEGG metabolic pathways.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Bacillus thuringiensis; Giant Strong Component; Metabolic network.
Ano: 2009 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822009000200036
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