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Monthly HPLC measurements of pigment concentration from an intertidal muddy sediment of Marennes-Oléron Bay, France ArchiMer
Cariou-le Gall, Valerie; Blanchard, Gerard.
Chloropigments and carotenoids were measured by HPLC in an intertidal muddy sediment of Marennes-Oleron Bay (France). Concentrations were determined as a function of sediment depth at low tide. The analyses were carried out at monthly intervals over 1 yr. Pigment analysis indicated that the microphytobenthic community was dominated by diatoms throughout the sampling year. Chlorophyll b was not encountered at any time or depth, indicating that no input from macrophytic detritus had occurred at the sampling site. There was a large pool of phaeopigments a, of which phaeophorbides were the major forms (75%). A microphytobenthic bloom occurred between March and June during which phaeopigments significantly increased with a high proportion of phaeophorbides...
Tipo: Text Palavras-chave: Pigment; HPLC; Intertidal mudflat; Microphytobenthos; Seasonal change.
Ano: 1995 URL: http://archimer.ifremer.fr/doc/00257/36844/36666.pdf
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Bacterial Dynamics in a Microphytobenthic Biofilm: a Tidal Mesocosm Approach ArchiMer
Agogue, Helene; Mallet, Clarisse; Orvain, Francis; De Crignis, Margot; Mornet, Francoise; Dupuy, Christine.
In intertidal mudflats, during low tide exposure, microphytobenthos (MPB) migrate vertically through the surface sediment and form, with the heterotrophic bacteria, a transient biofilm. Inside this biofilm, multiple interactions exist between MPB and bacteria. These micro-organisms secrete a wide range of extracellular polymeric substances (EPS), which are major components of the biofilm matrix. In this study, we used a tidal mesocosm experiment in order to decipher the interactions of the MPB-EPS-bacteria complex within the biofilm. We tried to determine if the EPS could control bacterial activities and/or production and/or richness according to the age of the biofilm and to the immersion/emersion period. The dynamics of biomasses of MPB and prokaryotes,...
Tipo: Text Palavras-chave: Muddy sediment; Microphytobenthos; Bacteria; Extracellular polymeric substances; Interactions; Mesocosm.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00181/29271/27682.pdf
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Mapping the Intertidal Microphytobenthos Gross Primary Production, Part II: Merging Remote Sensing and Physical-Biological Coupled Modeling ArchiMer
Savelli, Raphael; Méléder, Vona; Cugier, Philippe; Polsenaere, Pierre; Dupuy, Christine; Lavaud, Johann; Barnett, Alexandre; Le Fouest, Vincent.
Microphytobenthos (MPB) at the sediment surface of intertidal mudflats are known to show a high spatial and temporal variability in response to the biotic and abiotic conditions prevailing at the mud surface. It makes long-term and large-scale monitoring of MPB Gross Primary Production (GPP) difficult to set up. In this study, we developed the first 3D physical-biological coupled model (MARS-3D) that explicitly simulates GPP of intertidal MPB at the mudflat scale, and we compared the outputs with in situ and space remote sensing MPB GPP data. We discuss the sources of discrepancies between the modeling and the remote sensing approach in the light of future developments to be done. For instance, the remote sensing algorithm provides a very synoptic view of...
Tipo: Text Palavras-chave: Microphytobenthos; Intertidal mudflat; Gross primary production; Remote sensing; Physical-biological modeling.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00654/76612/77764.pdf
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Biomasse et production primaire du phytoplancton et du microphytobenthos de deux biotopes sableux (Golfe de Fos, France) ArchiMer
Plante-cuny, Marie-reine; Bodoy, Alain.
The primary production (phytoplankton and microphytobenthos) of a coastaL shallow water ecosystem (0.5 m) was investigated in two sandy areas, differing by their wave exposure. The physical and chemical parameters, the functional chlorophyll and pheopigments as well as the primary production were measured monthly, throughout a two-year study. The bivalve Ruditapes decussatus was the dominant species in the sheltered station (RD), whereas Donax trlmcu/us inhabited the other station (DT) which was exposed to the open-sea waves. Microphytic biomasses were determined after extracting chlorophyll a and pheopigments in 90% acetone. by spectrophotometric measurements before and after acidification. Gross hourly primary production was estimated by measuring the...
Tipo: Text Palavras-chave: Biomasse; Production primaire; Phytoplancton; Microphytobenthos; Mediterranee; Biomass; Primary production; Phytoplancton; Microphytobenthos; Mediterranean.
Ano: 1987 URL: http://archimer.ifremer.fr/doc/1987/publication-2870.pdf
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Stable isotope analysis position of intertidal of food source and trophic nematodes and copepods ArchiMer
Rzeznik Orignac, J; Boucher, G; Fichet, Denis; Richard, P.
Four dominant nematode species and various copepods from an intertidal mudflat in Marennes-Oleron Bay were analyzed for delta C-13 and delta N-15 ratios together with their potential food source, the microphytobenthos. It was shown that microphytobenthic C is passed to nematodes either by grazing or predation on herbivorous meiofauna by other nematodes. Diatoms of different sizes exhibited different C-13 content, which can be reflected in herbivorous meiofauna, such as the nematodes Daptonema oxycerca and Metachromadora remanei and the bulk of copepods, indicating they can select different sizes of diatoms. Results confirm the need to analyze meiofauna feeding habits at the species or genera level since the delta N-15 and delta C-13 signatures differed...
Tipo: Text Palavras-chave: Stable isotopes; Marennes Oleron; Mudflat; Food web; Benthic diatoms; Microphytobenthos; Meiofauna; Copepods; Nematodes.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4292.pdf
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Ecologie trophique de l'espèce ingénieur Crepidula fornicata et implications pour le fonctionnement de son habitat ArchiMer
Androuin, Thibault.
The slipper limpet (Crepidula fornicata) is an invasive species of European coasts. Protandric hermaphrodite, this gregarious species forms individuals' stacks which accumulate in high density on bottom. For a long time considered as a detrimental invader, the slipper limpet is also an ecosystem engineer, modifying its habitat both physically and biologically. It is model to study how invasive and engineer species can structure and modify the ecosystem that they colonize. In this Ph.D. thesis, these effects have been examined through the trophic functioning of habitats colonized by the slipper limpet, with a special reference to the primary benthic production. Experimental stimulation of subtidal microphytobenthos (MPB) has been demonstrated by the...
Tipo: Text Palavras-chave: Isotopes stables; Acides gras; Imagerie hyperspectrale; Microphytobenthos; Rade de Brest; Stable isotopes; Fatty acids; Hyperspectral imaging; Microphytobenthos; Bay of Brest.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00679/79121/81610.pdf
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Dynamic model of the short-term variability of microphytobenthic biomass on temperate intertidal mudflats ArchiMer
Guarini, Jean-marc; Blanchard, Gf; Gros, Philippe; Gouleau, Dominique; Bacher, Cedric.
In the present paper, we list and document the relevant behavioral and physiological processes controlling primary productivity of epipelic microalgae on intertidal mudflats in order to develop a simplified model. We first propose, in an attempt to characterize the 'photosynthetically active biomass' of the epipelic community, a new approach to describe the photic environment at the sediment surface, by substituting a discrete a-layer model in place of continuous vertical light distribution. This concept thus allows us to build a functional representation of the distribution of the photosynthetically active biomass in the sediment and, by then integrating the light and temperature forcing of the latter biomass, to predict the dynamics of the whole epipelic...
Tipo: Text Palavras-chave: Microphytobenthos; Intertidal mudflat; Primary production; Dynamic model; Migratory rhythm; Ecophysiological response.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00000/10540/7601.pdf
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Dynamics of spatial patterns of microphytobenthic biomass: inferences from a geostatistical analyisis of two comprenhensive surveys in Marennes-Oléron Bay (France) ArchiMer
Guarini, Jean-marc; Blanchard, Gerard; Bacher, Cedric; Gros, Philippe; Riera, Pascal; Richard, Pierre; Gouleau, Dominique; Galois, Robert; Prou, Jean; Sauriau, Pierre-guy.
Microphytobenthos plays an important role as primary producer in shallow embayments subject to a tidal regime. The present paper aims to characterize the spatial patterns of sedimentary chlorophyll a (chl a) biomass in 2 seasons in the wide intertidal mudflats of the Marennes-Oleron Bay (France); furthermore, it provides estimates of total microphytobenthic biomass. Accordingly, a systematic sampling scheme was performed in June 1995 and in January 1996. On average, biomass was higher in June (ca 120 mg chl a m-2) than in January (ca 85 mg chl a m-2). Moreover, the geostatistical analysis revealed that spatial similarities were propagated over larger distances in June (6 km) than in January (2.2 km). In order to account for this result , we suggest that...
Tipo: Text Palavras-chave: Marennes Oleron; Intertidal mudflat; Geostatistics; Spatial distribution; Chrlorophyll a; Microphytobenthos.
Ano: 1998 URL: https://archimer.ifremer.fr/doc/1998/publication-3820.pdf
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How would the loss of production due to an herbicide have repercussions in the food web of an intertidal mudflat? Sensitivity analysis of an inverse model for Brouage mudflat, Marennes-Oleron Bay, France ArchiMer
Niquil, Nathalie; Kerleguer, G; Leguerrier, D; Richard, Pierre; Legrand, Helene; Dupuy, Christine; Pascal, P; Bacher, Cedric.
The presence of herbicides in the run-off water coming over Brouage mudflat (Marennes-Oleron Bay, France) is suspected to cause a loss of primary production by benthic diatom biofilm. Microphytobenthos being the main primary producer of this ecosystem, it was questioned about what could be the effect of such a modification of primary production on the entire food web that depends on it. The probable impacts were investigated through a sensitivity analysis conducted on the steady-state model of the Brouage mudflat, coupling two seasons and trophic-hydrodynamic flows. The loss of benthic primary production had an effect on compartments at a low trophic level, but was buffered at higher levels because of the compensation of herbivory by other pathways and...
Tipo: Text Palavras-chave: Intertidal mudflat food web; Pollution; Microphytobenthos; Inverse analysis; Sensitivity analysis.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-3613.pdf
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Spatio-temporal variations in intertidal mudflat erodability: Marennes-Oleron Bay, western France ArchiMer
Orvain, Francis; Sauriau, Pierre-guy; Le Hir, Pierre; Guillou, Gael; Cann, Philippe; Paillard, Michel.
A portable erosion device (ERIS) was deployed in November 2000 and May 2001 to investigate the spatio-temporal variation of fine-grained sediment erosion over a transect on the intertidal mudflats of Marennes-Oleron Bay, western France. The objective was to relate changes in bed erodability over diurnal emersion periods to bioturbation, rapid changes in sediment characteristics, and microphytobenthos biomass. Macrofaunal assemblages were dominated by the bivalve, Scrobicularia plana, on the upper mudflat, and by the gastropod, Hydrobia ulvae. on the middle mudflat. A power relationship was obtained where tau(cr) was plotted as a function of sediment density. Results from the upper part of the mudflat deviated from this relationship due to bioturbation by...
Tipo: Text Palavras-chave: EPS; Microphytobenthos; Erodability; Intertidal mudflat; Sediment; Scrobicularia plana; Hydrobia ulvae; Bioturbation; Resuspension; Eris.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3779.pdf
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Nutrient fluxes on an intertidal mudflat in Marennes-Oleron Bay, and influence of the emersion period ArchiMer
Feuillet-girard, Michelle; Gouleau, Dominique; Blanchard, Gérard; Joassard, Lucette.
Fluxes of nutrients (NH sub(4) super(+), NO sub(3) super(-), PO sub(4) super(3-) and Si(OH) sub(4)) were studied on an intertidal mudflat in Marennes-Oleron Bay, France, at two different seasons and at different times of the emersion period. Fluxes through the sediment-water interface were both calculated from vertical profiles of nutrient concentration in pore-water (diffusive fluxes, JD) and measured in light and dark benthic mini-chambers (measured fluxes, J sub(0)). Results indicate that ammonia was mainly released in summer while nitrate was mainly taken up in late winter. This uptake from the overlying water was probably due to the coupling of nitrification-denitrification within the sediment. The J sub(0) /J sub(D) ratio further indicates that...
Tipo: Text Palavras-chave: Estran vaseux; Flux de nutriments; Microphytobenthos; Bioturbation; Marennes-Oléron; Intertidal mudflat; Nutrient fluxes; Microphytobenthos; Bioturbation; Marennes-Oleron Bay.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00038/14893/12220.pdf
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Étude de la dynamique du microphytobenthos des vasières intertidales aux latitudes tempérées : approche combinée modélisation couplée physique-biologie et analyse de données satellitales ArchiMer
Savelli, Raphael.
The high primary production (PP) of intertidal mudflats at temperate latitudes is mostly supported by microphytobenthos (MPB), which support both benthic and pelagic food webs. In the present thesis, we use a physical-biological coupled model to investigate the spatial and temporal variability of MPB dynamics on a large temperate intertidal mudflat of the French Atlantic coast. The model explicitly simulates the MPB biomass and the grazer (Peringia ulvae) biomass and density. The outputs provide key findings on MPB dynamics. In winter-spring, optimal light and mud surface temperature (MST) conditions for MPB growth lead to a MPB spring bloom. Light is the most limiting driver over the year. However, a high MST limits the MPB growth 40% of the time during...
Tipo: Text Palavras-chave: Microphytobenthos; Vasière intertidale; Production primaire; Modélisation physique-biologie; Télédétection; Microphytobenthos; Intertidal mudflat; Primary production; Physical-biological modelling; Remote sensing.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00692/80423/83559.pdf
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Are epiphytes a significant component of intertidal Zostera noltii beds? ArchiMer
Lebreton, Benoit; Richard, Pierre; Radenac, Gilles; Bordes, Monique; Breret, Martine; Arnaud, Christophe; Mornet, Francoise; Blanchard, Gerard F..
The role of epiphytes in an intertidal Zostera noltii seagrass bed in Marennes-Oleron Bay was assessed in comparison with the other main benthic primary producers (Z. noltii, microphytobenthos) at two bathymetric levels and on a seasonal basis. Assemblage and biomass of epiphytes were studied using scanning electron microscopy (SEM). Z noltii and its detrital matter followed a typical seasonal pattern: microphytobenthos was present in large quantities throughout the year representing 21% of the total biomass while detrital matter, above-ground parts and below-ground parts accounted for 65, 9 and 5%, respectively. Only two species of epiphytic diatoms, Cocconeis scutellum and Cocconeis placentula, were observed on seagrass leaves. Epiphyte biomass was very...
Tipo: Text Palavras-chave: SEM; Cocconeis spp.; Epiphyte diatom; Microphytobenthos; Zostera noltii; Intertidal seagrass bed; Primary producer.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6589.pdf
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Variabilité spatio-temporelle de la biomasse microphytobenthique en rade de Brest et en Manche occidentale ArchiMer
Sagan, G; Thouzeau, G.
Microphytobenthic biomass was estimated in the Bay of Brest (1994) and the western English Channel (Trezen Vraz, 1993) using spectrophotometry. Best results (42 % difference) were obtained with an instantaneous extraction procedure at room temperature, compared with the cold extraction procedure. Chlorophyll biomass in sediment was higher in the western English Channel (65-215 mg Chl a m(-2)) than in the Bay of Brest (10-113 mg Chl a m(-2)), in contrast to total pigment biomass (Chl a + pheo a : 88-254 mg m(-2) at Trezen Vraz vs. 131-934 mg m(-2) in the Bay of Brest). This study emphasized decreasing pigment biomass from the estuary to the open sea. Low benthic pigment biomass in the Bay, compared to eutrophic ecosystems, agrees with previous studies on...
Tipo: Text Palavras-chave: Microphytobenthos; Biomasse; Écosystèmes côtiers; Forçage physique; Microphytobenthos; Biomass; Coastal ecosystems; Physical forcing.
Ano: 1998 URL: http://archimer.ifremer.fr/doc/00325/43651/43242.pdf
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Evaluation de l’état écologique des masses d’eau de transition dans le cadre de la DCE. Etude de la pertinence du suivi des peuplements du microphytobenthos estuarien ArchiMer
Ribeiro, Lourenço; Le Bris, Anthony; Hernandez Farinas, Tania; Buchet, Remi; Dutertre, Mickaël; Metzger, Edouard; Rosa, Philippe; Gernez, Pierre; Lerouxel, Astrid; Barille, Laurent.
In order to establish the ecological status of water bodies, the European Water Framework Directive (WFD) is based on the evaluation of a number of biological quality elements, as well as physical parameters supporting the biology. In estuaries, phytoplankton monitoring was not considered relevant because of the high turbidity characterizing the large metropolitan estuaries and the French overseas departments (Guyana). In this work, we considered the possibility of using microphytobenthos (MPB) as a biological indicator of the ecological status of estuaries. This activity report summarizes the actions undertaken in 2017 under an AFB / Université de Nantes convention, which is structured around two main axes: the first axis is based on the analysis of the...
Tipo: Text Palavras-chave: DCE; Diatomées benthiques; Diversité; Estuaires; Facteurs naturels; Gradient de perturbation; Loire; Bio-indication; Microphytobenthos; Pressions anthropiques; Télédétection.; Anthropogenic pressures; Benthic diatoms; Bio-indication; Diversity; Estuary; Loire; Microphytobenthos; Natural factors; Perturbation gradient; Remote sensing; WFD.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00446/55725/57376.pdf
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Does the size of the microphytobenthic biofilm on intertidal muflats depend on the available photosynthetic biomass? ArchiMer
Herlory, Olivier; Blanchard, G; Planche, S; Huet, V; Richard, Pierre.
Many scientists consider that the top centimetre of the sediment on intertidal mudflats contains the photosynthetic competent biomass (PCB). Part of this biomass migrates upward to the surface of the sediment during diurnal emersion periods to form a temporary biofilm: the photosynthetic active biomass (PAB). The present study tests the hypothesis that the size of the biofilm (PAB) is functionally dependent on PCB. Therefore, we have plotted PAB as a function of PCB for a range of different environmental conditions: 3 seasons and 5 tidal situations, representing a total of 600 cores. This investigation points out that, in spring and autumn, there was a simple linear relationship between PAB and PCB, thus indicating that the maximum size of the biofilm...
Tipo: Text Palavras-chave: Functional relationship; Biofilm; Biomass; Intertidal mudflat; Microphytobenthos.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-3622.pdf
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Dynamics and sources of suspended particulate organic matter in the Marennes-Oléron oyster farming bay: Insights from stable isotopes and microalgae ecology ArchiMer
Malet, Nathalie; Sauriau, Pierre-guy; Ryckaert, Mireille; Malestroit, Pascale; Guillou, Gael.
The aim of this study was to distinguish between sources of the complex variety of Marennes-Oléron Bay suspended particulate organic matter (SPOM) contributing to the tropho-dynamics of the Marennes-Oléron oyster farming bay. Basic biomarkers (Chl a, C/N and POC/Chl a ratios), carbon and nitrogen stable isotopes from SPOM were analyzed and the microalgae community was characterized. The sampling strategy was bimonthly from March 2002 to December 2003; samples were taken from an intertidal mudflat. Four main sources contributed to the SPOM pool: terrigenous input from rivers, neritic phytoplankton, resuspended microphytobenthos and periodic inputs from intertidal Zostera noltii meadows. Seasonal fluctuations were observed in both years of the study period:...
Tipo: Text Palavras-chave: Heatwave; Zostera noltii; Mudflat; Microphytobenthos; Phytoplankton; Suspended particulate organic matter; Marennes Oléron Bay.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4313.pdf
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Mapping the Intertidal Microphytobenthos Gross Primary Production Part I: Coupling Multispectral Remote Sensing and Physical Modeling ArchiMer
Méléder, Vona; Savelli, Raphael; Barnett, Alexandre; Polsenaere, Pierre; Gernez, Pierre; Cugier, Philippe; Lerouxel, Astrid; Le Bris, Anthony; Dupuy, Christine; Le Fouest, Vincent; Lavaud, Johann.
The gross primary production (GPP) of intertidal mudflat microphytobenthos supports important ecosystem services such as shoreline stabilization and food production, and it contributes to blue carbon. However, monitoring microphytobenthos GPP over a long-term and large spatial scale is rendered difficult by its high temporal and spatial variability. To overcome this issue, we developed an algorithm to map microphytobenthos GPP in which the following are coupled: (i) NDVI maps derived from high spatial resolution satellite images (SPOT6 or Pléiades), estimating the horizontal distribution of the microphytobenthos biomass; (ii) emersion time, photosynthetically active radiation (PAR), and mud surface temperature simulated from the physical model MARS-3D;...
Tipo: Text Palavras-chave: Microphytobenthos; Intertidal mudflat; Gross primary production; Remote sensing; NDVI; Modeling.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00643/75531/76429.pdf
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Kinetics of tidal resuspension of microbiota: Testing the effects of sediment cohesiveness and bioturbation using flume experiments ArchiMer
Blanchard, Gérard F; Sauriau, Pg; Cariou-le Gall, Valerie; Gouleau, D; Garet, Mj; Olivier, F.
Resuspension of the top few sediment layers of tidal mud flats is known to enhance planktonic biomass of microbiota (benthic diatoms and bacteria). This process is mainly controlled by tidal shear stress and cohesiveness of mud, and is also influenced by bioturbation activities. Laboratory experiments in a race track flume were performed to test the interactive effects of these factors on both the critical entrainment and resuspension kinetics of microbiota from silt-clay sediments from the Marennes-Oleron Bay, France. The marine snail Hydrobia ulvae was used to mimic surface bioturbation activities. As expected, the kinetics of microbial resuspension versus shear stress were largely controlled by the cohesiveness of silt-clay sediments. However, our...
Tipo: Text Palavras-chave: Microphytobenthos; Bacteria; Resuspension; Bioturbation; Hydrobia ulvae; Shear velocity; Sediment cohesiveness; Flume experiment.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00337/44789/44480.pdf
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Fonctionnement des marais maritimes atlantiques: échanges d'énergie et effets des flux aquacoles diffus ArchiMer
Bel Hassen, Malika.
French estuaries, from the Atlantic coast to the English channel, have been characterized by a poor phytoplankton biomass. The turbidity has always been considered as the limiting factor for phytoplankton. Estuarine ecosystems are situated at the boundary between the land and the sea. Consequently, they are subject to an enrichment by nutrient loadings from upland ecosystems. Although it has been demonstrated that a part of the nutrient loadings support an important benthic production. The part, which escapes to the estuarine benthic and planktonic food web and is exported to adjacent estuarine ecosystems, still remains undetermined. Quantifying the nu trient and particulate matter exchange between a macrotidal Bay, the Fier d'Ars, and the adjacent ocean...
Tipo: Text Palavras-chave: Aquaculture; Exportation; Matière dissoute; Fiers d'Ars; Systèmes d'Information Géographique; Importation; Usages; Lumière; Micorphytobenthos; Modélisation; Nutriments; Matière organique; Matière particulaire; Phytoplancton; Sédimentation; Aquaculture; Export; Dissolved matter; Fier d'Ars Bay; Geographic Information Systems; Import; Land use; Light; Microphytobenthos; Modelling; Nutrients; Organic matter; Particulate matter; Phytoplankton; Sedimentation.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00450/56185/57738.pdf
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