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Changes in G+C content of a neutrally evolving gene under a non-reversible dynamics measured by computer simulations based on experimental evolution data Genet. Mol. Biol.
Brunstein,Adriana; Varuzza,Leonardo; Sanson,Gerdine F. O.; Briones,Marcelo R. S..
To evaluate the effects of non-reversibility on compositional base changes and the distribution of branch lengths along a phylogeny, we extended, by means of computer simulations, our previous sequential PCR in vitro evolution experiment. In that study a 18S rRNA gene evolved neutrally for 280 generations and a homogeneous non-stationary model of base substitution based on a non-reversible dynamics was built from the in vitro evolution data to describe the observed pattern of nucleotide substitutions. Here, the process was extended to 840 generations without selection, using the model parameters calculated from the in vitro evolution experiment. We observed that under a non-reversible model the G+C content of the sequences significantly increases when...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Molecular evolution; Experimental phylogenetics; Neutral theory; Mathematical models of nucleotide substitutions.
Ano: 2004 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572004000400026
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Setting boundaries: Environmental and spatial effects on Odonata larvae distribution (Insecta) Anais da ABC (AABC)
Mendes,Thiago P.; Cabette,Helena S. R.; Juen,Leandro.
Environmental characteristics and spatial distances between sites have been used to explain species distribution in the environment, through Neutral (space) and Niche theory (environment) predictions. We evaluated the effects of spatial and environmental factors on Odonata larvae distribution along the Suiá-Missú River Basin, state of Mato Grosso. We tested the hypotheses that (1) the environment is the main factor structuring the community due to its ecophysiological requirements; and (2) the pattern, if present, is clearer for Zygoptera. Samples were made in 12 sites on the Suiá-Missú River Basin in three seasons (2007/2008), with a total of 1.382 Odonata larvae, comprising 10 families, 51 genera and 100 morphospecies. The Anisoptera were more abundant...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Anisoptera; Zygoptera; Neutral theory; Niche theory; Transition Cerrado-Amazon.
Ano: 2015 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652015000100239
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Misconceptions and false expectations in neutral evolution Biol. Res.
VALENZUELA,CARLOS Y..
Neutral evolution results from random recurrent mutation and genetic drift. A small part of random evolution, that which is related to protein or DNA polymorphisms, is the subject of the Neutral Theory of Evolution. One of the foundations of this theory is the demonstration that the mutation rate (m) is equal to the substitution rate. Since both rates are independent of population size, they are independent of drift, which is dependent upon population size. Neutralists have erroneously equated the substitution rate with the fixation rate, despite the fact that they are antithetical conceptions. The neutralists then applied the random walk stochastic model to justify alleles or bases that were fixated or eliminated. In this model, once the allele or base...
Tipo: Journal article Palavras-chave: Neutral evolution; Neutral theory; Misconceptions; Bases fixation; Elimination.
Ano: 2000 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0716-97602000000300004
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