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Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity ArchiMer
Le Roux, Frederique; Zouine, Mohamed; Chakroun, Nesrine; Binesse, Johan; Saulnier, Denis; Bouchier, Christiane; Zidane, Nora; Ma, Laurence; Rusniok, Christophe; Lajus, Aurelie; Buchrieser, Carmen; Medigue, Claudine; Polz, Martin F.; Mazel, Didier.
P>Vibrio splendidus is a dominant Vibrio species in seawater presenting a remarkable genetic diversity; several strains have been linked to invertebrate's mortality. We report the complete genome sequence of V. splendidus LGP32, an oyster pathogen, and its comparison with partial genome sequences from related strains. As is typical for the genus, V. splendidus LGP32 contains two chromosomes (3.29 and 1.67 Mb) and most essential cellular processes are encoded by chromosome 1. Comparison with two other V. splendidus partial genome sequences (strains 12B01 and Med222) confirms the previously suggested high genotypic diversity within this species and led to the identification of numerous strain-specific regions that could frequently not be assigned to a...
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Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6632.pdf
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Genomic diversity and evolution of the lyssaviruses. ArchiMer
Delmas, Olivier; Holmes, Edward; Talbi, Chiraz; Dacheux, Laurent; Bouchier, Christiane; Larrous, Florence; Bourhy, Hervé.
Lyssaviruses are RNA viruses with single-strand, negative-sense genomes responsible for rabies-like diseases in mammals. To date, genomic and evolutionary studies have most often utilized partial genome sequences, particularly of the nucleoprotein and glycoprotein genes, with little consideration of genome-scale evolution. Herein, we report the first genomic and evolutionary analysis using complete genome sequences of all recognised lyssavirus genotypes, including 14 new complete genomes of field isolates from 6 genotypes and one genotype that is completely sequenced for the first time. In doing so we significantly increase the extent of genome sequence data available for these important viruses. Our analysis of these genome sequence data reveals that all...
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Ano: 2008 URL: http://archimer.ifremer.fr/doc/00139/24994/23092.pdf
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