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Registros recuperados: 38
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A general eco-evolutionary framework for understanding bioinvasions Inra
Facon, B.; Genton, B.J.; Shykoff, J.; Jarne, P.; Estoup, A.; David, P..
Studies of bioinvasions have revealed various strategies of invasion, depending on the ecosystem invaded and the alien species concerned. Here, we consider how migration (as a demographic factor), as well as ecological and evolutionary changes, affect invasion success. We propose three main theoretical scenarios that depend on how these factors generate the match between an invader and its new environment. Our framework highlights the features that are common to, or differ among, observed invasion cases, and clarifies some general trends that have been previously highlighted in bioinvasions. We also suggest some new directions of research, such as the assessment of the time sequence of demographic, genetic and environmental changes, using detailed temporal...
Tipo: Journal Article Palavras-chave: INVASION BIOLOGIQUE; ESPECE ENVAHISSANTE BIOINVASION.
Ano: 2006 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2008e52b4e4b&uri=/notices/prodinra1/2008/08/
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Bridgehead effect in the worldwide invasion of the biocontrol Harlequin Ladybird Inra
Lombaert, E.; Guillemaud, T.; Cornuet, J.M.; Malausa, T.; Facon, B.; Estoup, A..
Recent studies of the routes of worldwide introductions of alien organisms suggest that many widespread invasions could have stemmed not from the native range, but from a particularly successful invasive population, which serves as the source of colonists for remote new territories. We call here this phenomenon the invasive bridgehead effect. Evaluating the likelihood of such a scenario is heuristically challenging. We solved this problem by using approximate Bayesian computation methods to quantitatively compare complex invasion scenarios based on the analysis of population genetics (microsatellite variation) and historical (first observation dates) data. We applied this approach to the Harlequin ladybird Harmonia axyridis (HA), a coccinellid native to...
Tipo: Journal Article Palavras-chave: ESPECE INVASIVE; COCCINELLE; COLONISATION; PREVENTION DES RISQUES COCCINELLIDAE; HARMONIA AXYRIDIS.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2010951f6b93&uri=/notices/prodinra1/2010/11/
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Changes in mating system and social structure of the ant Petalomyrmex phylax are associated with range expansion in Cameroon Inra
Dalecky, A.; Debout, G.; Estoup, A.; McKey, D.B.; Kjellberg, F..
Past climate shifts have led to major oscillations in species distributions. Hence historical contingencies and selective processes occurring during such phases may be determinants for understanding the forces that have shaped extant phenotypes. In the plant-ant Petalomyrmex phylax (Formicinae), we observed spatial variation in number of queens in mature colonies, from several queens (high polygyny) in the median part of its distribution to a moderate number of queens (weak polygyny) or even only a single queen (monogyny) in the southwestern most populations. This variation did not correlate with indicators of variation in current nest site availability and colony turnover, the supposedly determinant selective forces acting on gyny in ants. We show here...
Tipo: Journal Article Palavras-chave: FOURMI; INSECTE SOCIAL DNA MICROSATELLITES; FORMICINAE; GENE FLOW; INBREEDING; MONOGYNY; POLYGYNY; RANGE EXPANSION.
Ano: 2007 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD200856dd4d6&uri=/notices/prodinra1/2008/06/
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Characterization and PCR multiplexing of polymorphic microsatellite loci for the invasive ant Wasmannia auropunctata Inra
Fournier, D.; Foucaud, J.; Loiseau, A.; Cros-Arteil, S.; Jourdan, H.; Orivel, J.; Le Breton, J.; Chazeau, J.; Dejean, A.; Keller, L.; Estoup, A..
Highly polymorphic genetic markers provide a useful tool for estimating genetic parametersin studies of the evolution of sociality in insects. We isolated and characterized 12 polymorphicmicrosatellite loci in the invasive ant, Wasmannia auropunctata, and described experimental conditions for PCR (polymerase chain reaction) multiplexing and simultaneously genotyping these loci in two sets of five and seven markers. The number of alleles per locus ranged from two to 14 and the observed heterozygosity ranged from 0.233 to 0.967. Moreover, results of cross-species amplification tests are reported in three other species of Wasmannia and in two species of the genus Allomerus
Tipo: Journal Article Palavras-chave: STRUCTURE GENETIQUE; POLYMORPHISME ANTS; BLEPHARIDATTINI; ESPECE ENVAHISSANTE; MICROSATELLITES; MYRMICINAE; PEST.
Ano: 2005 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20074ea97322&uri=/notices/prodinra1/2007/08/
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Characterization and PCR multiplexing of polymorphic microsatellite loci for the locust Locusta migratoria (vol 5, pg 554, 2005) - corrigendum Inra
Chapuis, M.P.; Loiseau, A.; Michalakis, Y.; Lecoq, M.; Estoup, A..
Because of the scarcity of polymorphic genetic markers available in locust species, only a few population genetics studies have been carried out on this taxon. We isolated and characterized 11 polymorphic microsatellite loci in the pest locust Locusta migratoria capito, and described experimental conditions for polymerase chain reaction (PCR) multiplexing and simultaneously genotyping these loci. The number of alleles per locus ranged from six to 25, and the expected heterozygosity ranged from 0.431 to 0.957. Results of cross-taxon amplification tests are reported in six other Locusta migratoria subspecies, six species of the Oedipodinae subfamily and two other pest locust species
Tipo: Journal Article Palavras-chave: CRIQUET MIGRATEUR; POLYMORPHISME; MARQUEUR GENETIQUE LOCUST; LOCUSTA MIGRATORIA; MICROSATELLITES; NULL ALLELES; ORTHOPTERA; PEST.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2011bec98eb7&uri=/notices/prodinra1/2011/06/
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Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus Inra
Estoup, A.; Baird, S.; Ray, N.; Currat, M.; Cornuet, J.M.; Santos, F.; Beaumont, M.A.; Excoffier, L..
We developed a spatially explicit model of a bioinvasion and used an approximate Bayesian computation (ABC) framework to make various inferences from a combination of genetic (microsatellite genotypes), historical (first observation dates) and geographical (spatial coordinates of introduction and sampled sites) information. Our method aims to discriminate between alternative introduction scenarios and to estimate posterior densities of demographically relevant parameters of the invasive process. The performance of our landscape-ABC method is assessed using simulated data sets differing in their information content (genetic and/or historical data). We apply our methodology to the recent introduction and spatial expansion of the cane toad, Bufo marinus, in...
Tipo: Journal Article Palavras-chave: BIOINVASION; INFERERENCE BAYESIENNE; EXPANSION SPATIALE; INFERENCE DEMOGRAPHIQUE; DONNES HISTORIQUES BAYESIAN INFERENCE; BIOINVASION; DEMOGRAPHIC INFERENCES; GENETIC DATA; HISTORICAL DATA; SPATIAL EXPANSION.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2011c7948a67&uri=/notices/prodinra1/2011/06/
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Diversite et gestion genetique de la truite commune : apport de l'etude du polymorphisme des locus proteiques et microsatellites Inra
Presa, P.; Krieg, F.; Estoup, A.; Guyomard, R..
Nous avons examiné le polymorphisme électrophorétique de 47 locus enzymatiques dans 24 populations naturelles et domestiques de truite commune de France ainsi que la variabilité à 5 locus microsatellites dans 4 de ces populations. La proportion de locus enzymatiques polymorphes sur l’ensemble des échantillons est de 57% et varie de 0 à 37% entre populations. Ce polymorphisme permet de distinguer 2 sous-espèces distinctes occupantrespectivement les bassins atlantique et méditerranéen et dont la distance génétique standard (Nei) s’établit, en moyenne, à 0,10. La variabilité des populations atlantiques s’avère nettement plus élevée que celle des populations méditerranéennes et présente un certain degré de structuration géographique. Toutes les souches...
Tipo: Journal Article Palavras-chave: POLYMORPHISME NUCLEAIRE; GESTION GENETIQUE; MICROSATELLITE; DIVERSITE GENETIQUE.
Ano: 1994 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PUB9400032116041611&uri=/notices/prodinra1/2007/11/
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Do outbreaks affect genetic population structure? A worldwide survey in Locusta migratoria, a pest of plagued by microsatellite null alleles Inra
Chapuis, M.P.; Lecoq, M.; Michalakis, A.; Loiseau, A.; Sword, A.; Piry, S.; Estoup, A..
An understanding of the role of factors intrinsic to a species’ life history in structuring contemporary genetic variation is a fundamental, but understudied, aspect of evolutionary biology. Here, we assessed the influence of the propensity to outbreak in shaping worldwide genetic variation in Locusta migratoria, a cosmopolitan pest well known for its expression of density-dependent phase polyphenism. We scored 14 microsatellites in nine subspecies from 25 populations distributed over most of the species’ range in regions that vary in the historical frequency and extent of their outbreaks. We rejected the hypothesis that L. migratoria consists of two genetically distinct clusters adapted to habitats either rarely (nonoutbreaking) or cyclically...
Tipo: Journal Article Palavras-chave: CRIQUET MIGRATEUR COMPUTER SIMULATION; LIFE-HISTORY EVOLUTION; LOCUST; PHASE POLYPHENISM; SPATIAL DYNAMICS; SUBSPECIES.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD201030b8d97e&uri=/notices/prodinra1/2010/12/
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Ecologically heterogeneous populations of the invasive ant Wasmannia auropunctata within its native and introduced ranges Inra
Orivel, J.; Grangier, J.; Foucaud, J.; Le Breton, J.; Andrès, F.X.; Jourdan, H.; Delabie, J.H.C.; Fournier, D.; Cerdan, P.; Facon, B.; Estoup, A.; Dejean, A..
The biology of most invasive species in their native geographical areas remains largely unknown. Such studies are, however, crucial in shedding light on the ecological and evolutionary processes underlying biological invasions.The present study focuses on the little fire ant 2. Wasmannia auropunctata, a species native to Central and South America that has been widely introduced and which has become invasive throughout the tropics. We characterise and compare several ecological traits of native populations in French Guiana with those in one of its introduced ranges, New Caledonia.We found ecologically heterogeneous populations of 3. W. auropunctata coexisting in the species’ native geographical area. First, we found populations restricted to naturally...
Tipo: Journal Article Palavras-chave: BIOLOGICAL INVASION; DISTURBANCE; ECOLOGICAL RAITS; NATIVE; WASMANNIA AUROPUNCTATA; AIRE DE REPARTITION NATURELLE; ESPECES INVASIVES; FOURMI DE FEU.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2011edf5f41a&uri=/notices/prodinra1/2011/06/
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Ecologie et génétique évolutive d'une fourmi envahissante Wasmannia auropunctata IRD
Estoup, A.; Foucaud, J.; Loiseau, A.; Robert, S.; Rey, O.; Jourdan, Hervé; Konghouleux, Joël; Orivel, J.; Guéry, D..
Tipo: Text Palavras-chave: INSECTE; INVASION; PROPAGATION; STRUCTURE DE POPULATION; STRUCTURE GENETIQUE; POLYMORPHISME GENETIQUE; COMPORTEMENT; EVOLUTION; FACTEUR ANTHROPIQUE; LUTTE CHIMIQUE; LUTTE BIOLOGIQUE; FOURMI; INVASION BIOLOGIQUE; ESPECE ENVAHISSANTE.
Ano: 2010 URL: http://www.documentation.ird.fr/hor/fdi:010051752
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Eight polymorphic microsatellite loci for the Australian plague locust, Chortoicetes terminifera Inra
Chapuis, M.P.; Popple, J.A.; Simpson, S.J.; Estoup, A.; Martin, J.F.; Steinbauer, M.; McCulloch, L.; Sword, G.A..
Few population genetics studies have been carried out on major locust species. In particular, an understanding of the population genetic structure of the Australian plague locust, Chortoicetes terminifera, is lacking. We isolated and characterized eight polymorphic microsatellite loci in C. terminifera, and described experimental conditions for polymerase chain reaction multiplexing and genotyping these loci. The number of alleles per locus ranged from 11 to 29 and the expected heterozygosity ranged from 0.797 to 0.977. One locus was found to be X-linked. Results of cross-taxon amplification tests are reported in four species of the Oedipodinae subfamily
Tipo: Journal Article Palavras-chave: CRIQUET PELERIN; ESPECE INVASIVE CHORTOICETES TERMINIFERA; LOCUST; MICROSATELLITES; NULL ALLELES; ORTHOPTERA; PEST.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2009f0f82bce&uri=/notices/prodinra1/2010/02/
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Genetic variation for parental effects on the propensity to gregarise in Locusta migratoria Inra
Chapuis, M.P.; Estoup, A.; Augé-Sabatier, A.; Foucart, A.; Lecoq, M.; Michalakis, Y..
Background: Environmental parental effects can have important ecological and evolutionary consequences, yet little is known about genetic variation among populations in the plastic responses of offspring phenotypes to parental environmental conditions. This type of variation may lead to rapid phenotypic divergence among populations and facilitate speciation. With respect to density-dependent phenotypic plasticity, locust species (Orthoptera: family Acrididae), exhibit spectacular developmental and behavioural shifts in response to population density, called phase change. Given the significance of phase change in locust outbreaks and control, its triggering processes have been widely investigated. Whereas crowding within the lifetime of both offspring and...
Tipo: Journal Article Palavras-chave: CRIQUET MIGRATEUR.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2010c566ffaa&uri=/notices/prodinra1/2010/12/
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Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter? Inra
Leblois, R.; Estoup, A.; Streiff, R..
Fragmentation and loss of natural habitats are recognized as major threats to contemporary flora and fauna. Detecting past or current reductions in population size is therefore a major aim in conservation genetics. Statistical methods developed to this purpose have tended to ignore the effects of spatial population structure. However in many species, individual dispersal is restricted in space and fine-scale spatial structure such as isolation by distance (IBD) is commonly observed in continuous populations. Using a simulation-based approach, we investigated how comparative and single-point methods, traditionally used in a Wright-Fisher (WF) population context for detecting population size reduction, behave for IBD populations. We found that a complex...
Tipo: Journal Article Palavras-chave: FRAGMENTATION DE L'HABITAT; TAILLE DE LA POPULATION BOTTLENECK; HABITAT REDUCTION; ISOLATION BY DISTANCE; LIMITED DISPERSAL; SUMMARY STATISTICS.
Ano: 2006 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD200854bd3061&uri=/notices/prodinra1/2008/08/
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IBDSim: A computer program to simulate genotypic data under isolation by distance Inra
Leblois, R.; Estoup, A.; Rousset, F..
IBDSim is a package for the simulation of genotypic data under isolation by distance. It is based on a backward 'generation by generation' coalescent algorithm allowing the consideration of various isolation by distance models with discrete subpopulations as well as continuous populations. Many dispersal distributions can be considered as well as heterogeneities in space and time of the demographic parameters. Typical applications of our program include (i) the study of the effect of various sampling, mutational and demographic factors on the pattern of genetic variation; and (ii) the production of test data sets to assess the influence of these factors on inferential methods available to analyse genotypic data.
Tipo: Journal Article Palavras-chave: COALESCENCE; MICROSATELLITE COALESCENCE; DISPERSAL DISTRIBUTION; ISOLATION BY DISTANCE; MICROSATELLITE DNA; SIMULATION; SPATIAL AND TEMPORAL HETEROGENEITIES.
Ano: 2009 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20104a1b1e32&uri=/notices/prodinra1/2010/12/
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In defence of model-based inference in phylogeography (Reply) Inra
Beaumont, M.A.; Nielsen, R.; Robert, C.; Hey, J.; Gaggiotti, O; Knowles, L.; Estoup, A.; Panchal, M.; Corander, J.; Hickerson, M.; Sisson, S.A.; Fagundes, N.; Chikhi, L.; Beerli, P.; Vitalis, R.; Cornuet, J.M.; Huelsenbeck, J.; Foll, M.; Yang, Z.; Rousset, F.; Balding, D.; Excoffier, L..
Recent papers have promoted the view that model-based methods in general, and those based on Approximate Bayesian Computation (ABC) in particular, are flawed in a number of ways, and are therefore inappropriate for the analysis of phylogeographic data. These papers further argue that Nested Clade Phylogeographic Analysis (NCPA) offers the best approach in statistical phylogeography. In order to remove the confusion and misconceptions introduced by these papers, we justify and explain the reasoning behind model-based inference. We argue that ABC is a statistically valid approach, alongside other computational statistical techniques that have been successfully used to infer parameters and compare models in population genetics. We also examine the NCPA method...
Tipo: Journal Article Palavras-chave: PHYLOGEOGRAPHIE MOLECULAR EVOLUTION; PHYLOGEOGRAPHY; POPULATION GENETICS-EMPIRICAL; POPULATION GENETICS-THEORETICAL.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2010a6a04229&uri=/notices/prodinra1/2010/12/
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Inférence bayésienne dans des scénarios évolutifs complexes avec populations mélangées: application à l’abeille domestique Inra
Cornuet, J.M.; Excoffier, L.; Franck, P.; Estoup, A..
Nous présentons une méthode d'inférence statistique sur des paramètres démographiques et historiques de scénarios évolutifs. Cette méthode, fondée sur l'approche Approximate Bayesian Computation (ABC), aborde des scénarios complexes incluant des divergences et des remises en contact de populations. Nous l'avons appliquée à un jeu de données d'abeilles domestiques caractérisées à huit locus microsatellites. Le scénario concerne quatre populations reliées par deux divergences et deux remises en contact. Quatre groupes de populations ont subi chacun une double analyse afin d'évaluer la stabilité des estimations. De plus, les erreurs et biais relatifs moyens, calculés sur 500 jeux de données simulés avec des valeurs de paramètres voisines des estimations...
Tipo: Conference Paper Palavras-chave: ABEILLE DOMESTIQUE; INFERENCE BAYESIENNE; DIVERGENCE INFERENCE; DEMOGRAPHY; ADMIXTURE; MICROSATELLITE.
Ano: 2006 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2008c3c32ea6&uri=/notices/prodinra1/2008/08/
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Inference on microsatellite mutation processes in the invasive mite, Varroa destructor, using reversible jump Markov Chain Monte Carlo Inra
Cornuet, J.M.; Beaumont, M.A.; Estoup, A.; Solignac, M..
Varroa destructor is a parasitic mite of the Eastern honeybee Apis cerana. Fifty years ago, two distinct evolutionary lineages (Korean and Japanese) invaded the Western honeybee Apis mellifera. This haplo–diploid parasite species reproduces mainly through brother–sister matings, a system which largely favors the .xation of new mutations. In a worldwide sample of 225 individuals from 21 locations collected on Western honeybees and analyzed at 19 microsatellite loci, a series of de novo mutations was observed. Using historical data concerning the invasion, this original biological system has been exploited to compare three mutation models with allele size constraints for microsatellite markers: stepwise (SMM) and generalized (GSM) mutation models, and a...
Tipo: Journal Article Palavras-chave: ABEILLE DOMESTIQUE MICROSATELLITE; MUTATION MODEL; MCMC; MARKOV CHAIN MONTE CARLO.
Ano: 2006 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20083c3ba28&uri=/notices/prodinra1/2008/08/
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Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0) Inra
Cornuet, J.M.; Ravigné, V.; Estoup, A..
Background : Approximate Bayesian computation (ABC) is a recent flexible class of Monte-Carlo algorithms increasingly used to make model-based inference on complex evolutionary scenarios that have acted on natural populations. The software DIYABC offers a user-friendly interface allowing non-expert users to consider population histories involving any combination of population divergences, admixtures and population size changes. We here describe and illustrate new developments of this software that mainly include (i) inference from DNA sequence data in addition or separately to microsatellite data, (ii) the possibility to analyze five categories of loci considering balanced or non balanced sex ratios: autosomal diploid, autosomal haploid, X-linked, Y-linked...
Tipo: Journal Article Palavras-chave: MODELISATION BAYESIENNE; SCENARIO.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2010a95c7dfe&uri=/notices/prodinra1/2010/11/
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Infering population history with DIYABC: a user-friendly approach to Approximate Bayesian Computation Inra
Cornuet, J.M.; Santos, F.; Beaumont, M.A.; Robert, C.P.; Marin, J.M.; Balding, D.J.; Guillemaud, T.; Estoup, A..
Genetic data obtained on population samples convey information about their evolutionary history. Inference methods can extract this information (at least partially) but they require sophisticated statistical techniques that have been made available to the biologist community (through computer programs) only for simple and standard situations typically involving a small number of samples. We propose here a computer program (DIYABC) for inference based on Approximate Bayesian Computation (ABC), in which scenarios can be customized by the user to fit many complex situations involving any number of populations and samples. Such scenarios involve any combination of population divergences, admixtures and stepwise population size changes. DIYABC can be used to...
Tipo: Journal Article Palavras-chave: INFERENCE; HISTORY; POPULATION DYNAMICS; POPULATION GENETICS; STATISTICS; MATHEMATICAL PROGRAMMING.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2009bea71fa3&uri=/notices/prodinra1/2011/04/
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Inferring introduction routes of invasive species using approximate Bayesian computation on microsatellite data Inra
Guillemaud, T.; Beaumont, M.A.; Ciosi, M.; Cornuet, J.M.; Estoup, A..
Determining the routes of introduction provides not only information about the history of an invasion process, but also information about the origin and construction of the genetic composition of the invading population. It remains difficult, however, to infer introduction routes from molecular data because of a lack of appropriate methods. We evaluate here the use of an approximate Bayesian computation (ABC) method for estimating the probabilities of introduction routes of invasive populations based on microsatellite data. We considered the crucial case of a single source population from which two invasive populations originated either serially from a single introduction event or from two independent introduction events. Using simulated datasets, we found...
Tipo: Journal Article Palavras-chave: INVASION BIOLOGIQUE; ESPECE INVASIVE; MODELE STOCHASTIQUE; DERIVE GENETIQUE DIABROTICA VIRGIFERA VIRGIFERA; COLEOPTERA; CHRYSOMELIDAE.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2011a584a816&uri=/notices/prodinra1/2011/01/
Registros recuperados: 38
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