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Registros recuperados: 66
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Accumulation and mobilization of lipids in relation to reproduction of yellowfin tuna (Thunnus albacares) in the Western Indian Ocean ArchiMer
Zudaire, Iker; Murua, Hilario; Grande, Maitane; Pernet, Fabrice; Bodin, Nathalie.
Total lipid content and lipid class composition were analyzed in gonads, liver and white muscle of yellowfin tuna (Thunnus albacares) throughout ovary development to understand its reproductive allocation strategy and to assess the relation between female condition and reproduction. A total of 112 females were collected onboard purse-seiner in the Western Indian Ocean from January to March 2009, from June to July 2009, and from April to May 2010. Gonads were characterized by highly variable total lipid contents ranging from 5 to 27 μg mg−1 of wet weight (ww) with a predominance of neutral lipids, mainly triacylglycerols (TAG) and sterol- and wax-esters. The different lipid classes in gonads described an accumulative pattern through the maturity process...
Tipo: Text Palavras-chave: Tropical tuna; Lipid class composition; Reproductive allocation strategy; Income-capital breeder; Fecundity; FADs.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00171/28266/28075.pdf
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Associations between farming practices and disease mortality of Pacific oyster Crassostrea gigas in a Mediterranean lagoon ArchiMer
Pernet, Fabrice; Lagarde, Franck; Le Gall, Patrik; Roque D'Orbcastel, Emmanuelle.
We present the first large-scale, high-resolution spatial and temporal pattern of disease mortality caused by Ostreid herpesvirus 1 (OsHV-1) that has affected Pacific oyster Crassostrea gigas in France every year since 2008, in relation to local farm use. Mortality was monitored in healthy oyster spat deployed at 106 locations in the Thau Mediterranean lagoon during the epizootic that occurred in spring 2011. We conducted a field survey of farming practices in the areas where the sentinel oysters were placed before the epizootic. We found that the risk of disease mortality in sentinel oysters was higher within the bivalve farming area than outside it, suggesting that the infection pressure is much higher in areas with intensive farming activity. The risk...
Tipo: Text Palavras-chave: Aquaculture; Epidemiology; OsHV-1; Shellfish farming.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00201/31248/30662.pdf
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Bacterial colonization of winter flounder Pseudopleuronectes americanus fed live feed enriched with three different commercial diets ArchiMer
Seychelles, L. H.; Audet, C.; Tremblay, R.; Lemarchand, K.; Pernet, Fabrice.
The proliferation of bacteria in intensive aquaculture systems may be responsible for poor growth and mass mortality of marine fish larvae. Essential fatty acids provided in the diet could protect larvae by modulation of the immune response via arachidonic acid (AA) and eicosapentaenoic acid (EPA). Winter flounder Pseudopleuronectes americanus larvae were fed rotifers Brachionus plicatilis enriched with three commercial diets containing different fatty acid profiles. Bacterial colonization on the gills and skin and in the intestinal lumen was evaluated at the end of the rotifer feeding period (day 26), and growth was surveyed until metamorphosis. At 26 days post hatching, larvae fed rotifers containing the higher AA content and with a higher...
Tipo: Text Palavras-chave: Bacteria; Colonization; Fatty acids; Live feed; Winter flounder.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00031/14273/12399.pdf
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Connecting organic to mineral: How the physiological state of an ecosystem-engineer is linked to its habitat structure ArchiMer
Curd, Amelia; Pernet, Fabrice; Corporeau, Charlotte; Delisle, Lizenn; Firth, Louise B.; Nunes, Flavia; Dubois, Stanislas.
The honeycomb worm Sabellaria alveolata is capable of building extensive bioconstructions, including what are currently considered Europe’s largest biogenic reefs. The size and volume of these bioconstructions, however, vary greatly, such that not all habitats engineered by S. alveolata may be easily identified as reefs. Given that European environmental legislation protects marine habitats that are classified as “reefs”, it is important to identity a clear set of definition criteria. Furthermore, quantifiable and unequivocal criteria are also needed to evaluate the ecological (health) state of these reefs, in order to best monitor and protect them. Here we propose new terminology to describe the physical appearance of these bioconstructions and attempt to...
Tipo: Text Palavras-chave: Biochemical indicators; Health; Ecological status; Sabellaria alveolata; Biogcnic reef; Engineer species.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00464/57608/60175.pdf
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Connectivities with shellfish farms and channel rivers are associated with mortality risk in oysters ArchiMer
Gangnery, Aline; Normand, Julien; Duval, Cyrielle; Cugier, Philippe; Grangeré, Karine; Petton, Bruno; Petton, Sebastien; Orvain, Francis; Pernet, Fabrice.
Oyster diseases have major consequences on fisheries and aquaculture. In France, young Pacific oysters Crassostrea gigas are severely hit by the ostreid herpesvirus, whereas adults suffer mortalities presumably caused by pathogenic bacteria. Here we investigated the origin and spread of mortalities that affect both young and adult oysters, and we identified and compared their risk factors. Mortality was monitored in 2 age classes of oysters deployed in early spring at 39 sites spread over a 37 km2 surface area inside and outside of shellfish farms. Environmental data obtained from numerical modelling were used to investigate risk factors. Mortality of young oysters associated with ostreid herpesvirus occurred in the oyster farming area. Hydrodynamic...
Tipo: Text Palavras-chave: Aquaculture; Bivalve; Disease; Epidemiology and health; Ecological modelling; Hydrodynamic connectivity.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00588/69983/67896.pdf
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Contrasted survival under field or controlled conditions displays associations between mRNA levels of candidate genes and response to OsHV-1 infection in the Pacific oyster Crassostrea gigas ArchiMer
Normand, Julien; Li, Ronghua; Quillien, Virgile; Nicolas, Jean-louis; Boudry, Pierre; Pernet, Fabrice; Huvet, Arnaud.
Pacific oyster Crassostrea gigas suffers from chronic or sporadic mortality outbreaks worldwide, resulting from infectious diseases and/or physiological disorders triggered by environmental factors. Since 2008, ostreid herpesvirus OsHV-1 μVar has been identified as the main agent responsible for mass mortality of juvenile oysters in Europe. Previous studies of genome-wide expression profiling have provided candidate genes that potentially contribute to genetically-based resistance to summer mortality. To assess their value in determining resistance to the juvenile mass mortality that has occurred in France since 2008, we analyzed the expression of 17 candidate genes in an experimental infection by OsHV-1 μVar, and in an in vivo field experiment. Individual...
Tipo: Text Palavras-chave: Molluscs; Gene expression profiling; Inhibitor of kappa B; Summer mortality; Ostreid herpesvirus.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00177/28823/27325.pdf
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Determination of risk factors for herpesvirus outbreak in oysters using a broad-scale spatial epidemiology framework ArchiMer
Pernet, Fabrice; Fuhrmann, Marine; Petton, Bruno; Mazurie, Joseph; Bouget, Jean-francois; Fleury, Elodie; Daigle, Gaetan; Gernez, Pierre.
Marine diseases have major impacts on ecosystems and economic consequences for aquaculture and fisheries. Understanding origin, spread and risk factors of disease is crucial for management, but data in the ocean are limited compared to the terrestrial environment. Here we investigated how the marine environment drives the spread of viral disease outbreak affecting The Pacific oyster worldwide by using a spatial epidemiology framework. We collected environmental and oyster health data at 46 sites spread over an area of 300 km2 along an inshore-offshore gradient during an epizootic event and conducted risk analysis. We found that disease broke out in the intertidal farming area and spread seaward. Mortalities and virus detection were observed in oysters...
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00450/56130/57670.pdf
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Dietary BMAA Exposure in an Amyotrophic Lateral Sclerosis Cluster from Southern France ArchiMer
Masseret, Estelle; Banack, Sandra; Boumediene, Farid; Abadie, Eric; Brient, Luc; Pernet, Fabrice; Juntas-morales, Raoul; Pageot, Nicolas; Metcalf, James; Cox, Paul; Camu, William.
Background Dietary exposure to the cyanotoxin BMAA is suspected to be the cause of amyotrophic lateral sclerosis in the Western Pacific Islands. In Europe and North America, this toxin has been identified in the marine environment of amyotrophic lateral sclerosis clusters but, to date, only few dietary exposures have been described. Objectives We aimed at identifying cluster(s) of amyotrophic lateral sclerosis in the Hérault district, a coastal district from Southern France, and to search, in the identified area(s), for the existence of a potential dietary source of BMAA. Methods A spatio-temporal cluster analysis was performed in the district, considering all incident amyotrophic lateral sclerosis cases identified from 1994 to 2009 by our expert...
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00168/27941/26234.pdf
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Dynamics of the Pacific Oyster Pathobiota during mortality episodes in Europe assessed by 16S rRNA gene profiling and a new target enrichment next‐generation sequencing strategy ArchiMer
Lasa, Aide; Cesare, Andrea; Tassistro, Giovanni; Borello, Alessio; Gualdi, Stefano; Furones, Dolors; Carrasco, Noelia; Cheslett, Deborah; Brechon, Amanda; Paillard, Christine; Bidault, Adeline; Pernet, Fabrice; Canesi, Laura; Edomi, Paolo; Pallavicini, Alberto; Pruzzo, Carla; Vezzulli, Luigi.
Infectious agents such as the bacteria Vibrio aestuarianus or Ostreid herpesvirus 1 (OsHV‐1) have been repeatedly associated with dramatic disease outbreaks of Crassostrea gigas beds in Europe. Beside roles played by these pathogens microbial infections in C. gigas may derive from the contribution of a larger number of microorganisms than previously thought, according to an emerging view supporting the polymicrobial nature of bivalve disease. In this study, the microbial communities associated with a large number of C. gigas samples collected during recurrent mortality episodes at different European sites were investigated by real‐time PCR and 16SrRNA gene‐based microbial profiling. A new target enrichment next‐generation sequencing protocol for selective...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00508/61952/66036.pdf
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Effect of environmental drivers on the reproduction of the pacific oyster Crassostrea gigas in the Mediterranean: The case of the Thau lagoon ArchiMer
Ubertini, Martin; Lagarde, Franck; Le Gall, Patrik; Mortreux, Serge; Pernet, Fabrice; Fiandrino, Annie; Pouvreau, Stephane; Roque D'Orbcastel, Emmanuelle.
The aquaculture of the oyster Crassostrea gigas is largely based on natural recruitment of the species on spat collectors along the french Atlantic coast, the remaining spat being provided by hatcheries and nurseries. Due to an increase in the climate/meteorological variability, during the last twenty years, the natural spat collection has become variable, from null to overabundant depending on the year. Since 2008, the oyster spat mortalities worsen the situation, reducing the available spat and increasing the cost of the latter. However, the temporal variability of the natural recruitment modalities in the Mediterranean do not allow the aquaculture industry to rely on native spats, making the understanding of natural recruitment in the Mediterranean a...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00248/35894/34422.pdf
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Effect of Rhodomonas salina addition to a standard hatchery diet during the early ontogeny of the scallop Pecten maximus ArchiMer
Tremblay, Rejean; Cartier, Simon; Miner, Philippe; Pernet, Fabrice; Quere, Claudie; Moal, Jeanne; Muzellec, Marie-louise; Mazuret, Michel; Samain, Jean-francois.
The main objective of this study was to identify algal diets that maximize the survival and growth and alter the biochemical content of Pecten maximus larvae with the aim of improving metamorphosis. We also evaluated the potential of the cryptophyceae Rhodomonas salina as a food source for these larvae. Two flagellates, Isochrysis aff. galbana (T) and Pavlova lutheri (P), and two diatoms, Chaetoceros gracilis (C) or Skeletonema costatum (S), were tested as two ternary diets, namely PTC and PTS. PTC and PTS were compared with diets that also included R. salina (R). The addition of R. salina and the replacement of C. gracilis by S. costatum in the traditional hatchery diet seem to be two interesting alternatives for increasing the productivity of larval...
Tipo: Text Palavras-chave: Algal fatty acids and sterols; Energetic content; Metamorphosis; Nutrition; Scallop.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-2404.pdf
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Effect of shear velocity and flow regimes on scallop post-larval detachment feed on two different diets ArchiMer
Gagne, Renee; Tremblay, Rejean; Olivier, Frederic; Pernet, Fabrice; Miner, Philippe; Samain, Jean-francois.
Through biological flume experiments, we studied the effect of shear velocity and attachment period on the percent detachment of Pecten maximus post-larvae of different sizes reared on two experimental diets. The first diet, (Pavlova lutheri, Isochrysis galbana, Chaetoceros calcitrans), which served as a reference diet (PTC), is commonly used in bivalve hatcheries; the second is the PTC diet with the addition of Rhodomonas salina (PTCR). Our results indicate that the detachment of post-larvae fed PTCR diet showed significant interactions between scallop length, attachment period and shear stress, while the post-larvae feed with the PTC diet showed only effect of shear stress factor. Furthermore, post-larvae exposed to various flume velocities showed...
Tipo: Text Palavras-chave: Attachment; Pecten maximus; Benthic boundary layer; Flume; Diet.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00111/22219/20056.pdf
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Effet de traitements thermiques sur la résistance du naissain d’huître creuse au phénomène de mortalité massive - THERMARES ArchiMer
Pernet, Fabrice; Petton, Bruno; Tamayo, David.
L’objectif de cette étude vise à déterminer l’effet de basses températures (10°C et 13°C) pendant des durées variables (0 et 80 jours) sur la survie du naissain d’huîtres creuses préalablement infecté suite à une exposition en rade de Brest pendant 5 ou 8 jours. Le naissain d’huître creuse préalablement infecté par OsHV-1 µvar par exposition en milieu naturel pendant 5 d ou 8 d, puis transféré à basse température (10°C ou 13°C) pendant 5 à 80 d, présente des mortalités plus faibles et plus tardives que les animaux témoins en laboratoire. La réduction des mortalités observée dans le naissain exposé à basse température coïncide avec une diminution progressive des concentrations d’ADN appartenant à OsHV-1 dans les tissus, au point de devenir non-détecté ou...
Tipo: Text Palavras-chave: Huître creuse; Naissain; Mortalité massive; OsHV-1 μvar; Température; Pacific oyster; Mass mortality; OsHV-1 μvar; Spat; Temperature.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00210/32135/30592.pdf
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Energy and Antioxidant Responses of Pacific Oyster Exposed to Trace Levels of Pesticides ArchiMer
Epelboin, Yanouk; Quere, Claudie; Pernet, Fabrice; Pichereau, Vianney; Corporeau, Charlotte.
Here, we assess the physiological effects induced by environmental concentrations of pesticides in Pacific oyster Crassostrea gigas. Oysters were exposed for 14 d to trace levels of metconazole (0.2 and 2 mu g/L), isoproturon (0.1 and 1 mu g/L), or both in a mixture (0.2 and 0.1 mu g/L, respectively). Exposure to trace levels of pesticides had no effect on the filtration rate, growth, and energy reserves of oysters. However, oysters exposed to metconazole and isoproturon showed an overactivation of the sensing-kinase AMP-activated protein kinase alpha (AMPK alpha), a key enzyme involved in energy metabolism and more particularly glycolysis. In the meantime, these exposed oysters showed a decrease in hexokinase and pyruvate kinase activities, whereas 2-DE...
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Ano: 2015 URL: https://archimer.ifremer.fr/doc/00284/39490/44227.pdf
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Environmental anomalies, energetic reserves and fatty acid modifications in oysters coincide with an exceptional mortality event ArchiMer
Pernet, Fabrice; Barret, Jean; Marty, Claire; Moal, Jeanne; Le Gall, Patrik; Boudry, Pierre.
Mortality of oysters Crassostrea gigas occurred along the coasts of France during summer 2008, causing a serious crisis in French oyster production. During spring to summer 2008, 5 groups of 1-yr old oysters of different origins and ploidy levels deployed in the Thau lagoon (France) were sampled for biometrical and biochemical analyses; environmental parameters were monitored in the same area. Mortality occurred in 2 episodes: 13 May to 10 June and 24 June to 9 July. Wild-collected oysters showed mortality sooner than other groups but total overall mortality was 85% in all groups. Mortality occurred when seawater temperature was >19 degrees C during the reproductive season when energetic reserves of oysters were at their lowest. Energy reserve levels...
Tipo: Text Palavras-chave: Bivalves; Energetic reserve; Environment; Fatty acid; Summer mortality; Trophic signatures; Temperature.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00003/11388/7964.pdf
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Episodes de mortalité massive de moules bleues observés en 2014 dans les Pertuis charentais ArchiMer
Bechemin, Christian; Soletchnik, Patrick; Polsenaere, Pierre; Le Moine, Olivier; Pernet, Fabrice; Protat, Martin; Fuhrmann, Marine; Quere, Claudie; Goulitquer, Sophie; Corporeau, Charlotte; Lapegue, Sylvie; Travers, Marie-agnes; Morga, Benjamin; Garrigues, Manon; Garcia, Celine; Haffner, Philippe; Dubreuil, Christine; Faury, Nicole; Baillon, Laury; Baud, Jean-pierre; Renault, Tristan.
Mass mortality outbreaks (90-100%) in both juvenile and adult blue mussels were reported in 2014 along the Pertuis Charentais area of the French Atlantic coast. A series of studies were carried out to learn more about the phenomenon through detecting pathogens, describing environmental conditions and establishing the physiological status of the animals. Bacteria identif ied as belonging to the V. splendidus species were detected in dying mussels and seem able to cause mortality in blue mussels in the laboratory. Unusual environmental conditions (large amounts of fresh water, re-suspension of sediments during a series of storms, and a high renewal rate of specific water masses in Brittany’s Pertuis area) may be partially responsible for sparking the phenomen
Tipo: Text Palavras-chave: Mortalités; Moules; Pertuis Charentais; Vibrio splendidus; Environnement; Mortality; Mussels; Pertuis Charentais; Vibrio splendidus; Environment.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00312/42343/41682.pdf
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Exploring local reproductive differentiation of Pacific oyster population recently settled in northern Europe by transcriptomic approach ArchiMer
Sussarellu, Rossana; Huvet, Arnaud; Lelong, Christophe; Pernet, Fabrice; Quillen, Virgile; Lapegue, Sylvie; Cornette, Florence; Jensen, Lasse Fast; Bierne, Nicolas; Boudry, Pierre.
Originating from north-eastern Asia, the Pacific oyster Crassostrea gigas has been introduced, mainly for aquaculture purpose, into a large number of countries. Although highly variable, its invasive nature has been reported in an increasing number of coastal areas, notably. Northern Europe. We set up a common garden experiment based on the comparison of progenies of Pacific oysters sampled in France, where populations settled since the introduction of the species in the 70’s, and Denmark, where established populations were observed since the beginning of 90s. Pure and hybrid progenies, resulting from crosses within and between adults sampled in both populations, were studied for their sex-ratio, condition index, transcriptomics, and biochemical parameters
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00167/27815/26008.pdf
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Expression of candidate genes related to metabolism, immunity and cellular stress during massive mortality in the American oyster Crassostrea virginica larvae in relation to biochemical and physiological parameters ArchiMer
Genard, Bertrand; Moraga, Dario; Pernet, Fabrice; David, Elise; Boudry, Pierre; Tremblay, Rejean.
Quantification of mRNA of genes related to metabolism, immunity and cellular stress was examined in relation to a massive mortality event during the culture of American oyster larvae, Crassostrea virginica which was probably, in regard to previous microbiological analysis, induced by vibrio infection. To document molecular changes associated with the mortality event, mRNA levels were compared to biochemical and physiological data, previously described in a companion paper. Among the 18 genes studied, comparatively to the antibiotic control, 10 showed a lower relative gene expression when the massive mortality occurred. Six of them are presumed to be related to metabolism, corroborating the metabolic depression associated with the mortality event suggested...
Tipo: Text Palavras-chave: Massive mortality; Relative gene expression; Metabolism; Immunity; Cellular stress; Larvae.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00075/18585/16138.pdf
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Facteurs explicatifs de la dynamique spatio-temporelle des mortalités d’huîtres creuses Crassostrea gigas dans la lagune de Thau ArchiMer
Pernet, Fabrice; Lagarde, Franck; Cesmat, Ludovic; Jeannée, Nicolas; Barret, Jean; Le Gall, Patrik; Quere, Claudie; Fiandrino, Annie; Miguet, Marine; Boulet, Hélène; Keck, Nicolas; Roque D'Orbcastel, Emmanuelle.
Cette étude avait pour objectif principal de déterminer les facteurs explicatifs de la dynamique spatio-temporelle des surmortalités d’huîtres creuses dans la lagune de Thau. Les facteurs étudiés étaient : la pathologie (détection d’ADN appartenant à l’Ostreid herpesvirus 1 OsHV-1 et au groupe bactérien Vibrio splendidus), l’état énergétique des huîtres (triglycérides, sucres totaux et acides gras comme marqueurs trophiques), les pratiques d’élevage et l’hydrodynamique. Afin de répondre à ces objectifs, nous avons suivi la mortalité d’un lot d’huîtres sentinelles, âgé de moins d’un an, maintenu indemne de mortalité, dans lequel on ne détectait pas d’ADN appartenant à OsHV-1. Le lot a été déployé mi-mars 2011 sur 106 stations dans la lagune de Thau, où les...
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Ano: 2012 URL: http://archimer.ifremer.fr/doc/00092/20355/18015.pdf
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Factors influencing disease-induced mortality of Pacific oysters Crassostrea gigas ArchiMer
Petton, Bruno; Boudry, Pierre; Alunno-bruscia, Marianne; Pernet, Fabrice.
Mortalities of oyster Crassostrea gigas seed associated with ostreid herpesvirus OsHV-1 μVar have been observed in many oyster-producing countries since 2008. The present study, comprised of 4 complementary experiments, aimed to identify factors associated with disease-induced oyster mortality in order to propose mitigation strategies. Our first experiment compared survival of oysters from natural spatfall with others sampled from nurseries, after thermal elevation in the laboratory from <14 to 21°C. A total of 60% of the tested wild seed batches (n = 51) were infected by OsHV-1, exhibited mortality and were able to transmit the disease to cohabited naïve oysters. Comparatively, only 1 out of the 32 tested batches sampled from nurseries presented...
Tipo: Text Palavras-chave: Epidemiology; Risk analyses; Shellfish farming; Virus OsHV-1 mu Var.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00257/36777/35390.pdf
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