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Application of a bioenergetic growth model to larvae of the pearl oyster Pinctada margaritifera L. ArchiMer
Thomas, Yoann; Garen, Pierre; Pouvreau, Stephane.
We applied, for the first time, a dynamic energy budget (DEB) growth model to the larval phase in the pearl oyster Pinctada margaritifera var. cumingii (Linnaeus, 1758) to evaluate the impact of spatio-temporal variation in the atoll lagoon environment on its capacity for development. The specific parameters of the model, which represent ingestion, temperature effect and the relationship between length and biovolume of the larvae, were determined from experiments or taken from the literature. The interpretation of the values of these parameters allowed us to identify the underlying adaptive character trait: P. margaritifera larvae have a good capacity to exploit low food concentrations and a narrow range of thermal tolerance restricted to hydrobiological...
Tipo: Text Palavras-chave: Growth Model; Dynamic Energy Budget; Larva; Pinctada Margaritifera; Atoll Lagoon.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00048/15919/13346.pdf
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Assessing the sensitivity of bivalve populations to global warming using an individual-based modelling approach ArchiMer
Thomas, Yoann; Bacher, Cedric.
Climate change exposes benthic species populations in coastal ecosystems to a combination of different stressors (e.g. warming, acidification and eutrophication), threatening the sustainability of the ecological functions they provide. Thermal stress appears to be one of the strongest drivers impacting marine ecosystems, acting across a wide range of scales, from individual metabolic performances to geographic distribution of populations. Accounting for and integrating the response of species functional traits to thermal stress is therefore a necessary step in predicting how populations will respond to the warming expected in coming decades. Here, we developed an individual‐based population model using a mechanistic formulation of metabolic processes...
Tipo: Text Palavras-chave: Benthic species; Biogeography; Climate scenario; Dynamic energy budget; Global warming; Phenology; Population dynamics; Temperature tolerance.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00450/56163/57710.pdf
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Development of in situ hybridisation using 16S rRNA gene to monitor black-lip pearl oyster, Pinctada margaritifera, larvae in plankton samples ArchiMer
Thomas, Yoann; Belliard, Corinne; Garen, Pierre; Gueguen, Yannick; Montagnani, Caroline.
In French Polynesia, the black-lip pearl oyster Pinctada margaritifera has been farmed to produce pearls since the 1980s, forming the basis of a major industry. The sustainability of this activity relies on spat collection in the lagoons. However, pearl oyster spat can be difficult to identify for the evaluation of stock variations. It is especially hard to distinguish Pinctada spp. larvae at a very early stage of development. In the present study, a whole- mount in situ hybridisation (ISH) technique was developed to allow the discrimination of larvae of closely-related pearl oyster species found in the French Polynesian atolls. Using specific ribosomal 16S-DNA sequence data, we were able to successfully differentiate between Pinctada margaritifera and...
Tipo: Text Palavras-chave: Whole larvae in situ hybridisation; 16S rRNA; Plankton; Species identification; Pearl oyster; Pinctada margaritifera.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00035/14603/11923.pdf
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Disruption of amylase genes by RNA interference affects reproduction in the Pacific oyster Crassostrea gigas ArchiMer
Huvet, Arnaud; Beguel, Jean-philippe; Cavaleiro, Nathalia; Thomas, Yoann; Quillien, Virgile; Boudry, Pierre; Alunno-bruscia, Marianne; Fabioux, Caroline.
Feeding strategies and digestive capacities can have important implications for variation in energetic pathways associated with ecological and economically important traits, such as growth or reproduction in bivalve species. Here, we investigated the role of amylase in the digestive processes of Crassostrea gigas, using in vivo RNA interference. This approach also allowed us to investigate the relationship between energy intake by feeding and gametogenesis in oysters. Double-stranded (ds)RNA designed to target the two α-amylase genes A and B was injected in vivo into the visceral mass of oysters at two doses. These treatments caused significant reductions in mean mRNA levels of the amylase genes: −50.7% and −59% mRNA A, and −71.9% and −70.6% mRNA B in 15...
Tipo: Text Palavras-chave: Alpha-Amylase; DsRNA; Gametogenesis; Marine bivalve; Dynamic energy budget.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00271/38239/36422.pdf
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Ecologie larvaire de l'huître perlière (Pinctada margaritifera, L.), croissance et dispersion dans un lagon d'atoll polynésien ArchiMer
Thomas, Yoann.
Understanding key factors determining the bentho-pelagic species larval growth and dispersal remains one of the challenges of marine ecology, notably to understand the adult population structure and dynamics. In the present study, we explore this determinism on the development and dispersal of the black-lip pearl oyster (Pinctada margaritifera var. cumingii, Linné 1758) larvae in a French Polynesian atoll lagoon (Ahe, Tuamotu archipelago). Rearing of the pearl oyster for the production of black pearls takes on a major social and economic place in French Polynesia. However, the supply of pearl oyster seed to the farms depends entirely on the natural collection of wild spat of the only one specie P. margaritifera, and spatial and temporal variability of spat...
Tipo: Text Palavras-chave: Ecologie larvaire; Hétérogénéité environnementale; Modélisation; Croissance; Dispersion; Huître perlière à lèvres noires; Pinctada margaritifera; Lagon d’atoll; Polynésie française; Larval ecology; Environmental heterogeneity; Modeling; Growth; Dispersal; Black-lip pearl oyster; Pinctada margaritifera; Atoll lagoon; French Polynesia.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00003/11449/7999.pdf
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Effects of of hypoxia on metabolic functions in marine organisms: Observed patterns and modelling assumptions within the context of Dynamic Energy Budget (DEB) theory ArchiMer
Thomas, Yoann; Flye Sainte Marie, Jonathan; Chabot, Denis; Aguirre-velarde, Arturo; Marques, Gonçalo M; Pecquerie, Laure.
Hypoxia is a decrease in dissolved oxygen that causes physiological disturbances in marine fishes and invertebrates, including reduced mobility, growth rate and reproductive success, altered phenology and increased vulnerability to diseases. Under pressure from global changes such as warming or eutrophication, ocean and coastal ecosystems worldwide are becoming less oxygenated. In order to better understand the consequences of hypoxia on marine systems, there is a need for predicting hypoxia-induced changes from individual organisms to populations. By combining the effect of several stressors on species metabolic performances and life-history traits across their full life-cycle, the Dynamic Energy Budget (DEB) theory offers a suitable framework for...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00473/58466/65967.pdf
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Global change and climate-driven invasion of the Pacific oyster (Crassostrea gigas) along European coasts: a bioenergetics modelling approach ArchiMer
Thomas, Yoann; Pouvreau, Stephane; Alunno-bruscia, Marianne; Barille, Laurent; Gohin, Francis; Bryere, Philippe; Gernez, Pierre.
Aim The spread of non-indigenous species in marine ecosystems world-wide is one of today's most serious environmental concerns. Using mechanistic modelling, we investigated how global change relates to the invasion of European coasts by a non-native marine invertebrate, the Pacific oyster Crassostrea gigas. Location Bourgneuf Bay on the French Atlantic coast was considered as the northern boundary of C. gigas expansion at the time of its introduction to Europe in the 1970s. From this latitudinal reference, variations in the spatial distribution of the C. gigas reproductive niche were analysed along the north-western European coast from Gibraltar to Norway. Methods The effects of environmental variations on C. gigas physiology and phenology were studied...
Tipo: Text Palavras-chave: Biogeographical range expansion; Crassostrea gigas; DEB model; European coasts; Functional traits; Global change; Individual-based model; Invasive species; Remote-sensing.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00287/39828/38459.pdf
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Impact de la crevetticulture calédonienne sur l'environnement : état des lieux, recherche de traceurs des effluents et définition d'un programme de recherche pluriannuel ArchiMer
Lemonnier, Hugues; Thomas, Yoann; Legrand, Alexandre; Martin, Jean-louis; Herbland, Alain.
In the booming context of shrimp culture in French Caledonia, some research actions need to be considered in order (i) to make sure this production will not impact the quality and biodiversity of the coastal environment it is contingent upon (ii) for the field to highlight, based on objective bases, its good "environmental image", for an efficient commercialization of its products. In the framework of the MOM project, a number of actions have been carried out: Action 1: A bibliographical synthesis of the impact of shrimp culture on coastal environment has been conducted, taking into account the works carried out throughout the world and in French Caledonia in order to draw the main issues the Territory will have to deal with. It seems necessary to start...
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Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/rapport-6593.pdf
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Larval connectivity of pearl oyster through biophysical modelling; evidence of food limitation and broodstock effect ArchiMer
Thomas, Yoann; Dumas, Franck; Andrefouet, Serge.
The black-lip pearl oyster (Pinctada margaritifera) is cultured extensively to produce black pearls, especially in French Polynesia atoll lagoons. This aquaculture relies on spat collection, a process that experiences spatial and temporal variability and needs to be optimized by understanding which factors influence recruitment. Here, we investigate the sensitivity of P. margaritifera larval dispersal to both physical and biological factors in the lagoon of Ahe atoll. Coupling a validated 3D larval dispersal model, a bioenergetics larval growth model following the Dynamic Energy Budget (DEB) theory, and a population dynamics model, the variability of lagoon-scale connectivity patterns and recruitment potential is investigated. The relative contribution of...
Tipo: Text Palavras-chave: Pearl oyster; Lagoon; Biophysical modelling; Connectivity; Population dynamics; DEB model.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00321/43192/42926.pdf
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Larval Dispersal Modeling of Pearl Oyster Pinctada margaritifera following Realistic Environmental and Biological Forcing in Ahe Atoll Lagoon ArchiMer
Thomas, Yoann; Dumas, Franck; Andrefouet, Serge.
Studying the larval dispersal of bottom-dwelling species is necessary to understand their population dynamics and optimize their management. The black-lip pearl oyster (Pinctada margaritifera) is cultured extensively to produce black pearls, especially in French Polynesia's atoll lagoons. This aquaculture relies on spat collection, a process that can be optimized by understanding which factors influence larval dispersal. Here, we investigate the sensitivity of P. margaritifera larval dispersal kernel to both physical and biological factors in the lagoon of Ahe atoll. Specifically, using a validated 3D larval dispersal model, the variability of lagoon-scale connectivity is investigated against wind forcing, depth and location of larval release, destination...
Tipo: Text
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00197/30843/29210.pdf
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Metazooplankton communities in the Ahe atoll lagoon (Tuamotu Archipelago, French Polynesia): Spatiotemporal variations and trophic relationships ArchiMer
Pagano, Marc; Sagarra, Pascual-boi; Champalbert, Gisele; Bouvy, Marc; Dupuy, Christine; Thomas, Yoann; Charpy, Loic.
Metazooplankton abundance, biomass (<80 mu m, 200-500 mu m and >500 mu m) and community structure in the Ahe atoll were studied together with their relationships with environmental factors (temperature, salinity, wind) and trophic factors (phytoplankton, bacteria, heterotrophic nanoflagellates (HNF) and ciliates) during three periods in 2008-2009. Meroplankton, mainly bivalve and gastropod larvae, was dominant. Holoplankton was dominated by copepods, the main species being Oithona spp., Paracalanus parvus, Clausocalanus spp., Corycaeus spp., Acartia fossae and Undinula vulgaris. The results suggest a clear wind influence on the structure and horizontal distribution of the zooplankton communities. The metazooplankton appeared to be controlled mainly...
Tipo: Text Palavras-chave: Metazooplankton; Spatio-temporal patterns; Trophic relationships; Pearl oyster; Atoll lagoon; French Polynesia.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00101/21207/19419.pdf
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Modeling reproductive traits of an invasive bivalve species under contrasting climate scenarios from 1960 to 2100 ArchiMer
Gourault, Melaine; Petton, Sebastien; Thomas, Yoann; Pecquerie, Laure; Marques, Goncalo M.; Cassou, Christophe; Fleury, Elodie; Paulet, Yves-marie; Pouvreau, Stephane.
Identifying the drivers that control the reproductive success of a population is vital to forecasting the consequences of climate change in terms of distribution shift and population dynamics. In the present study, we aimed to improve our understanding of the environmental conditions that allowed the colonization of the Pacific oyster, Crassostrea gigas, in the Bay of Brest since its introduction in the 1960s. We also aimed to evaluate the potential consequences of future climate change on its reproductive success and further expansion. Three reproductive traits were defined to study the success of the reproduction: the spawning occurrence, synchronicity among individuals and individual fecundity. We simulated these traits by applying an individual-based...
Tipo: Text Palavras-chave: DEB model; IPCC scenarios; Reproductive traits; Crassostrea gigas; Bay of Brest.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00440/55188/56794.pdf
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Modeling the impact of hypoxia on the energy budget of Atlantic cod in two populations of the Gulf of Saint-Lawrence, Canada ArchiMer
Lavaud, Romain; Thomas, Yoann; Pecquerie, Laure; Benoit, Hugues P.; Guyondet, Thomas; Flye-sainte-marie, Jonathan; Chabot, Denis.
Like many marine species around the globe, several stocks of Atlantic cod (Gadus morhua) live in increasingly hypoxic waters. In the Gulf of Saint Lawrence (GSL) in Canada, the deep channels traversing the semi-enclosed sea exhibit year-round hypoxia, identified as one of the limiting factor for the recovery of GSL cod in its northern part. While many individuals in the northern GSL are known to venture in deeper, warmer, and more hypoxic waters of the Gulf channels, those in the southern GSL live in a shallower, colder, and more oxygenated environment. In this study, we use the modeling framework of the Dynamic Energy Budget (DEB) theory to disentangle the effects of hypoxia, temperature and food on the life-history traits of these two populations of cod...
Tipo: Text Palavras-chave: Hypoxia; Dynamic energy budget; Atlantic cod; Growth; Temperature; Gulf of Saint-Lawrence.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00448/55966/57472.pdf
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Modelling paralytic shellfish toxins (PST) accumulation in Crassostrea gigas by using Dynamic Energy Budgets (DEB) ArchiMer
Pousse, Emilien; Flye-sainte-marie, Jonathan; Alunno-bruscia, Marianne; Hegaret, Helene; Rannou, Eric; Pecquerie, Laure; Marques, Goncalo M.; Thomas, Yoann; Castrec, Justine; Fabioux, Caroline; Long, Marc; Lassudrie, Malwenn; Hermabessiere, Ludovic; Amzil, Zouher; Soudant, Philippe; Jean, Fred.
As other filter-feeders, Crassostrea gigas can concentrate paralytic shellfish toxins (PST) by consuming dinoflagellate phytoplankton species like Alexandrium minutum. Intake of PST in oyster tissues mainly results from feeding processes, i.e. clearance rate, pre-ingestive sorting and ingestion that are directly influenced by environmental conditions (trophic sources, temperature). This study aimed to develop a mechanistic model coupling the kinetics of PST accumulation and bioenergetics in C. gigas based on Dynamic Energy Budget (DEB) theory. For the first time, the Synthesizing Units (SU) concept was applied to formalize the feeding preference of oysters between non-toxic and toxic microalgae. Toxin intake and accumulation were both dependent on the...
Tipo: Text Palavras-chave: Alexandrium minutum; Paralytic shellfish toxins (PST); Dynamic Energy Budget (DEB); Modelling; Pacific oyster.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00455/56662/58407.pdf
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Modelling spatio-temporal variability of Mytilus edulis (L.) growth by forcing a dynamic energy budget model with satellite-derived environmental data ArchiMer
Thomas, Yoann; Mazurie, Joseph; Alunno-bruscia, Marianne; Bacher, Cedric; Bouget, Jean-francois; Gohin, Francis; Pouvreau, Stephane; Struski, Caroline.
In order to assess the potential of various marine ecosystems for shellfish aquaculture and to evaluate their carrying capacities, there is a need to clarify the response of exploited species to environmental variations using robust ecophysiological models and available environmental data. For a large range of applications and comparison purposes, a non-specific approach based on ‘generic’ individual growth models offers many advantages. In this context, we simulated the response of blue mussel (Mytilus edulis L.) to the spatio-temporal fluctuations of the environment in Mont Saint-Michel Bay (North Brittany) by forcing a generic growth model based on Dynamic Energy Budgets with satellite-derived environmental data (i.e. temperature and food). After a...
Tipo: Text Palavras-chave: Mussel; DEB; SeaWifs; Aquaculture; Site Selection; Resource Management.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00037/14836/14537.pdf
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Multi-scale distribution and dynamics of bivalve larvae in a deep atoll lagoon (Ahe, French Polynesia) ArchiMer
Thomas, Yoann; Garen, Pierre; Bennett, Auguste; Le Pennec, Marcel; Clavier, Jacques.
Bivalve larvae and hydrographic parameters were sampled over a range of spatio-temporal scales in a deep atoll lagoon. Bivalve larvae abundances were very high throughout the year: 18,550 m(-3) in average. Larvae were (i) concentrated at mid-depth with nocturnal ascent and diurnal descent, (ii) heterogeneously dispersed at the lagoon scale, (iii) subject to day-to-day variation in abundance and (iv) transferred between different parts of the lagoon providing evidence of intra-lagoonal connectivity. The primacy of physical factors was seen on large spatial scale with the diluting effect of water renewal and transfers by hydrodynamics. On smaller spatial scale, the primacy of biological processes was recognised, with larval swimming activity leading to dial...
Tipo: Text Palavras-chave: Bivalve larvae; Distribution patterns; Vertical migration; Pinctada margaritifera settlement; Deep atoll lagoon; French Polynesia.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00101/21200/20690.pdf
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Oyster (c. gigas) recruitment in Mediteranean lagoons ; new approaches for studying larval connectivity using MARS3D modeling tools ArchiMer
Ubertini, Martin; Fiandrino, Annie; Bernard, Ismael; Thomas, Yoann; Dumas, Franck; Pouvreau, Stephane; Roque D'Orbcastel, Emmanuelle; Lagarde, Franck.
The Thau lagoon, located at the South of France, provides 10% of the French pacific oyster Crassostrea gigas production (Robert et al., 2013). Despite this intensive shellfish production, the larval recruitment of this species within the Thau lagoon is still misunderstood and spat collection remains highly variable; as a consequence, shellfish farmers rely mostly on hatchery's spat. In 2012, the PRONAMED II project was launched, aiming to improve our understanding of the C. gigas reproductive cycle within Mediterranean lagoons and to explore the feasibility for oyster-spat collecting. In addition to an extensive sampling work encompassing both spatial and temporal features of larval recruitment, we tried to understand the contribution of larval dispersal...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00248/35905/34427.pdf
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Oyster reproduction is affected by exposure to polystyrene microplastics ArchiMer
Sussarellu, Rossana; Suquet, Marc; Thomas, Yoann; Lambert, Christophe; Fabioux, Caroline; Pernet, Marie Eve Julie; Le Goic, Nelly; Quillien, Virgile; Mingant, Christian; Epelboin, Yanouk; Corporeau, Charlotte; Guyomarch, Julien; Robbens, Johan; Paul-pont, Ika; Soudant, Philippe; Huvet, Arnaud.
Plastics are persistent synthetic polymers that accumulate as waste in the marine environment. Microplastic (MP) particles are derived from the breakdown of larger debris or can enter the environment as microscopic fragments. Because filter-feeder organisms ingest MP while feeding, they are likely to be impacted by MP pollution. To assess the impact of polystyrene microspheres (micro-PS) on the physiology of the Pacific oyster, adult oysters were experimentally exposed to virgin micro-PS (2 and 6 µm in diameter; 0.023 mg·L−1) for 2 mo during a reproductive cycle. Effects were investigated on ecophysiological parameters; cellular, transcriptomic, and proteomic responses; fecundity; and offspring development. Oysters preferentially ingested the 6-µm micro-PS...
Tipo: Text Palavras-chave: Microplastic; Reproduction; Energy allocation; Oyster.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00311/42233/41600.pdf
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Oysters as sentinels of climate variability and climate change in coastal ecosystems ArchiMer
Thomas, Yoann; Cassou, Christophe; Gernez, Pierre; Pouvreau, Stephane.
Beyond key ecological services, marine resources are crucial for human food security and socio-economical sustainability. Among them, shellfish aquaculture and fishing are of primary importance but become more vulnerable under anthropogenic pressure, as evidenced by reported mass mortality events linked to global changes such as ocean warming and acidification, chemical contamination, and diseases. Understanding climate-related risks is a vital objective for conservation strategies, ecosystems management and human health. We provide here a comprehensive study of the historical mortality of adult oysters related to observed climate variability along the French Atlantic coast from 1986 to 2015, and we built on this knowledge to develop hindcast and forecast...
Tipo: Text Palavras-chave: North Atlantic; Weather regime; Oyster; Monitoring network; Mortality risk assessment; Climate models; RCP scenarios.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00461/57255/59281.pdf
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Qualification zoo-sanitaire du naissain de captage 2013 de l'huître creuse Crassostrea gigas (QUALIF) - Détection précoce des maladies en épreuve thermique de laboratoire ArchiMer
Petton, Bruno; Riobe, Marion; Koechlin, Hugo; Queau, Isabelle; Mingant, Christian; Ratiskol, Dominique; Le Grand, Jacqueline; Petton, Sebastien; Thomas, Yoann; Alunno-bruscia, Marianne; Pouvreau, Stephane; Pernet, Fabrice; Maurer, Daniele; D'Amico, Florence; Lagarde, Franck; Mortreux, Serge; Roque D'Orbcastel, Emmanuelle; Mille, Dominique; Geay, A.; Bouquet, A.-l.; Cochet, Helene.
Depuis 2008, des mortalités massives d’huîtres creuses âgées de moins d’un an sont relevées sur le littoral français dès que la température de l’eau de mer atteint le seuil de 16°C. Ces mortalités de naissains sont associées à la détection du virus OsHV-1 μVar. Des travaux de qualification zoo-sanitaire menés depuis 2010 ont montré qu’un lot de naissains issus du captage naturel sur deux était infecté par le virus bien avant l’apparition des mortalités dans le milieu naturel, mais qu’a contrario les naissains d’écloserie expertisés présentaient un moindre risque de contamination. Dans le contexte de crise sanitaire chronique, l’objectif de notre étude était d’ obtenir une information qualitative relative au statut zoo-sanitaire OsHV -1 μ V ar des...
Tipo: Text Palavras-chave: Huitre creuse; OsHV - 1μVar; Epreuve thermique.; Maladie; Naissain; Pacific oyster; Spat; Disease; Thermal challenge; OsHV-1 μVar.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00276/38682/37180.pdf
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