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Registros recuperados: 7
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A fast algorithm to "de novo" genome wide tandem repeats discovery. Repositório Alice
NARCISO, M.; YAMAGISHI, M..
Tandem Repeats (TR) are sequences where the same pattern repeats consecutively. They have been used as genomic markers (microsatellite and minisatéllite) since the begining of the genomic era. Recently, new studies have associated TR to important regulatory processes which substantialy increased the interest in TR. The exponential reduction cost of sequencing caused by the new technologies, resulted in the proliferation of genome projects, and particularly of novel model organisms. Very often, the first sequence analysis is the identification of genetic markers such as SNPs and TRs. As the former is a by product of the assembly phase, the real chalenge resides in the latter since the TRs identification must be done de novo. This scenario requires a faster...
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Algoritmo; Marcadores genéticos; Polimorfismo de nucleotídeo único; Repetições em Tandem; Algorithms; Microsatellite repeats; Genetic markers; Tandem repeat sequences; Single nucleotide polymorphism.
Ano: 2011 URL: http://www.alice.cnptia.embrapa.br/handle/doc/909360
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A fast algorithm to "de novo" genome wide tandem repeats discovery. Repositório Alice
NARCISO, M.; YAMAGISHI, M..
Tandem Repeats (TR) are sequences where the same pattern repeats consecutively. They have been used as genomic markers (microsatellite and minisatéllite) since the begining of the genomic era. Recently, new studies have associated TR to important regulatory processes which substantialy increased the interest in TR. The exponential reduction cost of sequencing caused by the new technologies, resulted in the proliferation of genome projects, and particularly of novel model organisms. Very often, the first sequence analysis is the identification of genetic markers such as SNPs and TRs. As the former is a by product of the assembly phase, the real chalenge resides in the latter since the TRs identification must be done de novo. This scenario requires a faster...
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Algoritmo; Marcadores genéticos; Polimorfismo de nucleotídeo único; Repetições em Tandem; Algorithms; Microsatellite repeats; Genetic markers; Tandem repeat sequences; Single nucleotide polymorphism.
Ano: 2011 URL: http://www.alice.cnptia.embrapa.br/handle/doc/908712
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A new BLAST-based Gbrowse plugin. Repositório Alice
VELLOZO, A.; LOBO, F. P.; YAMAGISHI, M..
In this work, we present a new plugin to search sequences against the genome using the BLAST tool.
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Bioinformática; Genoma; Sequência genética; Bioinformatics; Genome; Sequence analysis.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/handle/doc/946664
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Building a transcriptome molecular marker platform for diagnosis of fungal plant pathogens. Repositório Alice
HERAI, R.; DITA, M.; WAALWIJK, C.; FERREIRA, G.; SOUZA, M.; KEMA, G.; FALCAO, P.; GIACHETTO, P.; YAMAGISHI, M..
By using an Expressed Sequence Tag (EST) library from all four races of Foc, we developed a molecular marker platform based on single sequence repeats (SSR).
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Marcador molecular; Patógenos de planta; Molecular markers; Pathogens.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/handle/doc/946607
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Desenvolvimento e validação de um painel de baixa densidade de marcadores snp relacionado a prolificade em ovinos. Repositório Alice
PAIVA, S. R.; LACERDA, T. S.; YAMAGISHI, M.; FARIA, D. A.; MCMANUS, C.; CAETANO, A.; BLACKBURN, H..
2016
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Recursos genéticos animais; Banco genético; Ovis Aries.
Ano: 2016 URL: http://www.alice.cnptia.embrapa.br/handle/doc/1068491
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Role of hydrophobicity in protein evolution. Repositório Alice
LEITE, V.; SILVA, R.; YAMAGISHI, M.; CHAHINE, J..
Effect of mutations on the stability of proteins is a crucial issue in protein evolution. Such effects depend strongly on the overall hydrophobic protein character. In a recent work we suggested two scenarios for folding with distinct protein evolution consequences [1]. Under low hydrophobic conditions, proteins collapse concomitantly with the formation of their native state, and are less robust to mutations. This feature implies higher homology among proteins of different species. On the other limit, at high hydrophobicity, proteins collapse before folding, and this case they are more susceptible to mutations, suggesting lower homology among proteins of different species. In this work we investigate this conjecture studying the homology of four proteins...
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Evolução de proteína; Hidrofobicidade em proteínas; Proteins.
Ano: 2010 URL: http://www.alice.cnptia.embrapa.br/handle/doc/876510
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The tambaqui (Colossoma macropomum) transcriptome at sex differentiation stage. Repositório Alice
LOBO, I.; NASCIMENTO, A.; YAMAGISHI, M.; GUIGUEN, Y.; SILVA, G. F.; ALMEIDA, F. L..
As females of tambaqui (Colossoma macropomum) are heavier than males at harvest, farming all-female populations would be more profitable. Unraveling the genetic and physiological mechanisms involved in sex determination and sex differentiation is then a fundamental objective in order to achieve sex control in this species. Therefore, we produced and assembled individual transcriptome libraries of juveniles sampled just prior to the gonadal sex differentiation in order to identify genes putatively related to testicular or ovarian differentiation in tambaqui.
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Colossoma Macropomum; Tambaqui.
Ano: 2018 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1100002
Registros recuperados: 7
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