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Registros recuperados: 34
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A high density genetic map of maritime pine based on AFLPs Inra
Chagné, D.; Lalanne, C.; Madur, D.; Kumar, S.; Frigério, J.M.; Krier, C.; Decroocq, S.; Savouré, A.; Bou-Dagher-Kharrat, M.; Bertocchi, E.; Brach, J.; Plomion, C..
Tipo: Conference Paper Palavras-chave: AFLP; DOUBLE PSEUDO-TESTCROSS; TAILLE PHYSIQUE; CARTE GENETIQUE.
Ano: 2002 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PUB0300011664096195&uri=/notices/prodinra1/2009/12/
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A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance Inra
Moroldo, M.; Paillard, S.; Marconi, R.; Legeai, F.; Canaguier, A.; Cruaud, C.; de Berardinis, V.; Guichard, C.; Brunaud, V.; Le Clainche, I.; Scalabrin, S.; Testolin, R.; di Gaspero, G.; Morgante, M.; Adam-Blondon, A.F..
Background: Whole-genome physical maps facilitate genome sequencing, sequence assembly, mapping of candidate genes, and the design of targeted genetic markers. An automated protocol was used to construct a Vitis vinifera 'Cabernet Sauvignon' physical map. The quality of the result was addressed with regard to the effect of high heterozygosity on the accuracy of contig assembly. Its usefulness for the genome-wide mapping of genes for disease resistance, which is an important trait for grapevine, was then assessed. Results: The physical map included 29,727 BAC clones assembled into 1,770 contigs, spanning 715,684 kbp, and corresponding to 1.5-fold the genome size. Map inflation was due to high heterozygosity, which caused either the separation of allelic...
Tipo: Journal Article Palavras-chave: MILDIOU; MALADIE FONGIQUE; CARTE GENETIQUE; SYSTEME IMMUNITAIRE; VIGNE; RESISTANCE AUX MALADIES; CARTOGRAPHIE; GENE CANDIDAT; GENETIQUE; SEQUENCE NUCLEOTIDIQUE; CABERNET SAUVIGNON PLANT IMMUNE SYSTEM; VITIS VINIFERA L.; NONHOST RESISTANCE; POWDERY MILDEW; GENOME SEQUENCE; LINKAGE MAP; RICE GENOME; BAC; ARABIDOPSIS; GENETICS.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2011dc1cb8fa&uri=/notices/prodinra1/2011/03/
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Amélioration génétique des bananiers pour la résistance aux maladies et ravageurs : contraintes liées à la plante IRD
Charrier, André.
Tipo: Text Palavras-chave: AMELIORATION DES PLANTES; RESSOURCES GENETIQUES; BIOMETRIE; STRUCTURE GENETIQUE; PHYLOGENIE; CARACTERE MORPHOLOGIQUE; CYTOGENETIQUE; POLYMORPHISME ENZYMATIQUE; DIVERSITE GENETIQUE; CARTE GENETIQUE; MARQUEUR MOLECULAIRE; GENOME.
Ano: 1993 URL: http://www.documentation.ird.fr/hor/fdi:39352
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Cartographie de locus de résistance au nématode à kyste chez la pomme de terre IRD
Caromel, B.; Mugniéry, D.; Lefebvre, V.; Ellissèche, D.; Rousselle-Bourgeois, F..
Tipo: Text Palavras-chave: POMME DE TERRE; NEMATODE PHYTOPARASITE; RESISTANCE DE L'HOTE; LUTTE GENETIQUE; ANALYSE GENETIQUE; TECHNIQUE RFLP; MARQUEUR MOLECULAIRE; CARTE GENETIQUE.
Ano: 2001 URL: http://www.documentation.ird.fr/hor/fdi:010028503
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Comparative mapping in Salicaceae: a tool for identifying important genes controlling adaptive traits Inra
Jorge, V.; Fabbrini, F.; Faivre-Rampant, P.; Fladung, M.; Gaudet, M.; Lagercrantz, U.; Leplé, J.C.; Morgante, M.; Pakull, B.; Sabatti, M.; Storme, V.; Taylor, G.; Vitacolonna, N.; DeWoody, J.; Bastien, C..
Comparative QTL mapping for adaptive traits among populations and species can lead to the identification of genomic regions conserved over a long evolutionary period and therefore potentially harboring genes of great importance for adaptive processes. At the same time, non-conserved QTLs could be responsible for local adaptation or interspecific differentiation.The availability of Populus as a model system for tree and woody perennial plant biology has largely been driven by the rapid development of genomic and molecular biology resources for this genus, culminating in the completion of a draft sequence of the Populus trichocarpa (black cottonwood) genome. Numerous genetic maps are available in different Populus and Salix species and QTLs for adaptive...
Tipo: Conference Paper Palavras-chave: GENE CANDIDAT; CARTE GENETIQUE; SEQUENCE GENOMIQUE; IDENTIFICATION DE GENES CANDIDATE GENE; GENETIC MAPPING; GENOME SEQUENCE; GENE IDENTIFICATION.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20105597576d&uri=/notices/prodinra1/2010/11/
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Construction of a cytogenetically anchored microsatellite map in rabbit Inra
Chantry-Darmon, C.; Urien, C.; Hayes, H.; Bertaud, M.; Chadi, S.; Chardon, P.; Vaiman, D.; Rogel-Gaillard, C..
Rabbit (Oryctolagus cuniculus) represents a valuablesource of biomedical models and corresponds to asmall but active economic sector in Europe for meatand fur. The rabbit genome has not been thoroughlystudied until recently, and high-resolution mapsnecessary for identification of genes and quantitativetrait loci (QTL) are not yet available. Our aim was toisolate over 300 new and regularly distributed (TG)nor (TC)n rabbit microsatellites. To achieve thispurpose, 164 microsatellite sequences were isolatedfrom gene-containing bacterial artificial chromosome(BAC) clones previously localized by fluorescencein situ hybridization (FISH) on all the rabbitchromosomes. In addition, 141 microsatellite sequenceswere subcloned from a plasmid genomiclibrary, and for 41...
Tipo: Journal Article Palavras-chave: CARTE GENETIQUE; LAPIN; CARTE CYTOGENETIQUE.
Ano: 2005 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20075d7b09fe&uri=/notices/prodinra1/2008/08/
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Construction of a molecular linkage map in coffee IRD
Paillard, M.; Lashermes, Philippe; Pétiard, V..
Une carte de liaison génétique du caféier (#Coffea canephora$) totalisant 1402 cM a été établie sur la base d'une population de plantes haploïde-doublées. Des marqueurs RFLP comme des marqueurs utilisant la PCR (RAPD) ont permis la construction de 15 groupes de liaison. Des clones de DNA génomiques de caféier ainsi que des DNAc ont été utilisés. Au total, 47 RFLP et 100 RAPD sont positionnés sur la carte de liaison. Un niveau relativement faible de polymorphisme est observé. 81 % des marqueurs RAPD et 85 % des marqueurs RFLP présentent une ségrégation significativement non différente (P < 0.01) du ration 1:1. La disponibilité d'une carte de liaison moléculaire du caféier offre de nombreuses perspectives tant pour des études génétiques que pour...
Tipo: Text Palavras-chave: AMELIORATION DES PLANTES; RESSOURCES GENETIQUES; HAPLOIDE; ADN; METHODE D'ANALYSE; PCR.REACTION DE POLYMERISATION EN CHAINE; RFLP.RESTRICTION FRAGMENT LENGTH POLYMORPHISM; HAPLOIDE DOUBLE; CARTE GENETIQUE.
Ano: 1996 URL: http://www.documentation.ird.fr/hor/fdi:010006514
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Construction of two genetic linkage maps in cultivated tetraploïd alfalfa (Medicago sativa) using microsatellite and AFLP markers Inra
Julier, B.; Flajoulot, S.; Barre, P.; Cardinet, G.; Santoni, S.; Huguet, T.; Huyghe, C..
Tipo: Journal Article Palavras-chave: TETRAPLOIDE; MICROSATELLITE; MARQUEUR AFLP; CARTE GENETIQUE.
Ano: 2003 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PUB9500019160110571&uri=/notices/prodinra1/2009/11/
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Contribution au développement et à l'utilisation des cartes génétiques moléculaires en génétique des riz IRD
Second, Gérard; Ghesquière, Alain; Causse, M.; Panaud, O..
Tipo: Text Palavras-chave: RESSOURCES GENETIQUES; POLYMORPHISME GENETIQUE; PHYLOGENIE; HYBRIDATION INTERSPECIFIQUE; RIZ; CARTE GENETIQUE; MARQUEUR MOLECULAIRE.
Ano: 1992 URL: http://www.documentation.ird.fr/hor/fdi:37671
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Development of a comprehensive comparative radiation hybrid map of bovine chromosome 7 (BTA7) versus human chromosomes 1 (HSA1), 5 (HSA5) and 19 (HSE19) Inra
Gautier, M.; Hayes, H.; BONSDORFF, T.; Eggen, A..
Tipo: Journal Article Palavras-chave: CARTOGRAPHIE RH; CARTE GENETIQUE; GENETIQUE COMPAREE; BOVIN.
Ano: 2003 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2007f6481d01&uri=/notices/prodinra1/2008/08/
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Distribution and chromosomal organization of 18S-5.8S-25S and 5S rDNA in Petunia species Inra
Benabdelmouna, A.; Abirached-Darmency, M..
Nous avons analysé la variation interspécifique de l’espaceur 5S ADNr par la tehnique d’amplification génique (PCR) dans sept espèces de Petunia. Les espèce étudiées peuvent être séparées en deux groupes suivant la taille des variants 5S ADNr amplifiés : un groupe avec une unité de répétition de 460 pb comprenant P linearis (2 n = 18) et P integrifolia (2 n = 14), et un deuxième groupe avec une unité de répétition de 350 pb comprenant toutes les autres espèces sauvages (2 n = 14) étudiées et les lignées de P hybrida. Les fragments amplifiés ont été clonés et ont servi de sondes pour l’hybridation in situ fluorescente afin de déterminer le nombre et la localisation des unités 5S. L’organisation chromosomique du 5S ADNr nous a permis de distinguer un groupe...
Tipo: Journal Article Palavras-chave: RFLP; CARTE GENETIQUE; SEQUENCE NUCLEOTIDIQUE.
Ano: 1997 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PUB9800033102069818&uri=/notices/prodinra1/2010/02/
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Etude de quelques gènes codant pour les récepteurs d'éthylène chez les caféiers IRD
Bustamante, José.
Tipo: Text Palavras-chave: CAFE; AMELIORATION DES PLANTES; AMELIORATION GENETIQUE; METABOLISME; FRUCTIFICATION; HORMONE VEGETALE; ETHYLENE; GENE; REGULATION; TRANSFERT DE GENE; PROTEINE; ETUDE EXPERIMENTALE; POLYMORPHISME GENETIQUE; PHYLOGENIE; CAFEIER; EXPRESSION DES GENES; FACTEUR DE TRANSCRIPTION; TECHNIQUE PCR; MATURATION; CARTE GENETIQUE; RECEPTEUR MEMBRANAIRE.
Ano: 2007 URL: http://www.documentation.ird.fr/hor/fdi:010039803
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Expanded comparative mapping between man and rabbit and detection of a new conserved segment between HSA22 and OCU4 Inra
Chantry-Darmon, C.; Bertaud, M.; Urien, C.; Chadi, S.; PERROCHEAU, M.; Rogel-Gaillard, C.; Hayes, H..
Rabbit, a domestic species exploited both in animalproduction and medical research has only recently begunto be included in gene mapping projects, in particular by theFrench National Institute of Agronomics. By 2002, less than 60genes had been precisely localised on rabbit chromosomes,which led us to start a large-scale project on gene mapping inrabbit with the publication of 133 gene localisations in 2003(Chantry-Darmon et al., 2003). Here, we report the localisationof 102 new genes resulting in good coverage of the rabbitgenome and an eight-fold enrichment of the gene map. In addition,we have detected a new conserved segment between rabbitchromosome 4q15.3 and part of human chromosome 22 andthus improved the comparative map with the human genome.
Tipo: Journal Article Palavras-chave: CARTE GENETIQUE; GENETIQUE COMPAREE; LAPIN; HOMME.
Ano: 2005 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2007ee750b6e&uri=/notices/prodinra1/2008/08/
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Expressed sequence tags for genes: A review Inra
Hatey, F.; Tosser-Klopp, G.; Clouscard-Martinato, C.; Mulsant, P.; Gasser, F..
Les « étiquettes » correspondent aux séquences des extrémités des ADN complémentaires, obtenues de manière systématique à partir d’une seule réaction de séquençage. Cependant, à partir d’un seul gène plusieurs étiquettes différentes peuvent être obtenues : celles qui correspondent aux deux extrémités de l’ADN complémentaire, aux ADN complémentaires de tailles différentes synthétisés à partir d’un même ARN messager, et aux différents ARN messagers issus d’une même séquence d’ADN génomique. L’identification des gènes correspondants est faite par comparaison avec les séquences nucléiques ou protéiques contenues dans les bases de données publiques (GenBank ou EMBL, SwissProt), en utilisant des logiciels d’alignement automatique tels que FASTA ou...
Tipo: Journal Article Palavras-chave: MARQUEUR; GENETIQUE COMPAREE; CARTE GENETIQUE.
Ano: 1998 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PUB0000008273079921&uri=/notices/prodinra1/2007/09/
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FONZIE: An optimized pipeline for minisatellite marker dicovery and primer design departing from large sequence data sets Inra
Bally, P.; Grandaubert, J.; Rouxel, T.; Balesdent, M.H..
BACKGROUND: Micro-and minisatellites are among the most powerful genetic markers known to date. They have been used as tools for a large number of applications ranging from gene mapping to phylogenetic studies and isolate typing. However, identifying micro-and minisatellite markers on large sequence data sets is often a laborious process. RESULTS: FONZIE was designed to successively 1) perform a search for markers via the external software Tandem Repeat Finder, 2) exclude user-defined specific genomic regions, 3) screen for the size and the percent matches of each relevant marker found by Tandem Repeat Finder, 4) evaluate marker specificity (i.e., occurrence of the marker as a single copy in the genome) using BLAST2.0, 5) design minisatellite primer pairs...
Tipo: Journal Article Palavras-chave: PCR; SEQUENCE NUCLEOTIDIQUE; CHAMPIGNON PHYTOPATHOGENE; POLYMORPHISME; CARTE GENETIQUE; CARTOGRAPHIE; GENOME  BIOINFORMATIQUE; CARTOGRAPHIE; MARQUEUR GENETIQUE; MINISATELLITE; MICROSATELLITE; PIPELINE; PRIMERS DESIGN.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20113c55270c&uri=/notices/prodinra1/2011/03/
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Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection Inra
Jorge, V.; Dowkiw, A.; Faivre-Rampant, P.; Bastien, C..
• In order to elucidate the genetic control of resistance to Melampsora larici-populina leaf rust in hybrid poplars, a Populus deltoides × P. trichocarpa F1 progeny was analysed for qualitative and quantitative rust resistances.• This progeny was evaluated for three components of quantitative resistance (latent period, uredinia number and uredinia size) to seven M. larici-populina strains in controlled conditions, and for one component of field susceptibility (rust colonization on the most infected leaf).• One qualitative resistance locus inherited from P. deltoides, R1, was localized on the genetic map. It segregates 1 : 1 in the F1 progeny and is effective against four of the studied strains. QTL analysis was performed separately on R1 and r1 genotype...
Tipo: Journal Article Palavras-chave: PEUPLIER HYBRIDE; CARTE GENETIQUE; ARCHITECTURE GENETIQUE; DETECTION DE QTL MELAMPSORA LARICI-POPULINA.
Ano: 2005 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2007fc50b4e1&uri=/notices/prodinra1/2007/04/
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Genetic improvement of bananas for resistance to diseases and pests : plant-related constraints IRD
Charrier, André.
Tipo: Text Palavras-chave: AMELIORATION DES PLANTES; RESSOURCES GENETIQUES; BIOMETRIE; STRUCTURE GENETIQUE; PHYLOGENIE; CARACTERE MORPHOLOGIQUE; POLYMORPHISME ENZYMATIQUE; CYTOGENETIQUE; DIVERSITE GENETIQUE; CARTE GENETIQUE; MARQUEUR MOLECULAIRE; GENOME.
Ano: 1993 URL: http://www.documentation.ird.fr/hor/fdi:39353
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Genetic linkage maps of Populus nigra L. including AFLPs, SSRs, SNPs, and sex trait Inra
Gaudet, M.; Jorge, V.; Paolucci, I.; Beritognolo, I.; Scarascia Mugnozza, G.; Sabatti, M..
Black poplar (Populus nigra L.) is a tree of ecological and economic interest. A better knowledge of P. nigra genome is needed for an effective protection and use of its genetic resources. The main objective of this study is the construction of a highly informative genetic map of P. nigra species including genes of adaptive and economic interest. Two genotypes originated from contrasted natural Italian populations were crossed to generate a F1 mapping pedigree of 165 individuals. Amplification fragment length polymorphism (AFLP), simple sequence repeat (SSR), and single nucleotide polymorphism (SNP) markers were used to genotype 92 F1 individuals, and the pseudo-test-cross strategy was applied for linkage analysis. The female parent map included 368...
Tipo: Journal Article Palavras-chave: CARTE GENETIQUE; IDENTIFICATION DE GENES; DETERMINISME DU SEXE.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20076d63e528&uri=/notices/prodinra1/2009/04/
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Genetic mapping of Tilapiine fishes IRD
Kocher, T.D..
Nous avons construit une carte génétique pour le tilapia #Oreochromis niloticus$ en utilisant des marqueurs ADN. La ségrégation de 62 locus microsatellites et de 112 AFLP (total = 174) a été étudiée dans 41 embryons haploïdes provenant d'une seule femelle. Nous avons identifié des liaisons entre 162 (93,1%) de ces marqueurs. Au total, 95% des microsatellites et 92% des AFLP sont liés sur la carte finale. La carte s'étend sur 704 cM en 30 groupes de liaison couvrant les 22 chromosomes de l'espèce. Vingt-quatre de ces groupes de liaison contiennent au moins un locus microsatellite. A partir de ces marqueurs qui sont à 15 cM, ou moins, les uns des autres, la longueur totale de la carte est approximativement de 100 à 1200 cM. Les données suggèrent que les...
Tipo: Text Palavras-chave: POISSON D'EAU DOUCE; MARQUEUR GENETIQUE; GENOTYPE; POLYMORPHISME GENETIQUE; CARTE GENETIQUE.
Ano: 1998 URL: http://www.documentation.ird.fr/hor/fdi:010015275
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Identification of genetic markers for quantitative traits in rice (Oryza sativa L.) = identification de marqueurs génétique pour des caractères quantitatifs chez le riz (Oryza sativa L.) IRD
Pham, Jean-Louis.
14 marqueurs génétiques, en majorité des loci isozymiques, situés sur au moins 6 chromosomes différents, ont été identifiés pour plusieurs caractères végétatifs et reproductifs chez #Oryza sativa$. (Résumé d'auteur)
Tipo: Text Palavras-chave: GENETIQUE QUANTITATIVE; AMELIORATION DES PLANTES; RIZ; LOCUS; ISOENZYME; IDENTIFICATION; MARQUEUR GENETIQUE; QTL; CARTE GENETIQUE.
Ano: 1990 URL: http://www.documentation.ird.fr/hor/fdi:30826
Registros recuperados: 34
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