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Registros recuperados: 76
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A Century after! Rediscovery of the ancient catfish Diplomystes Bleeker 1858 (Siluriformes: Diplomystidae) in coastal river basins of Chile and its implications for conservation Neotropical Ichthyology
Muñoz-Ramírez,Carlos P.; Briones,Raul; Colin,Nicole; Fierro,Pablo; Górski,Konrad; Jara,Alfonso; Manosalva,Aliro.
ABSTRACT The ancient catfish family Diplomystidae, with seven species endemic to rivers of southern South America, represents one of the oldest branches of the diverse order Siluriformes. With most species endangered, new reports of these species become extremely valuable for conservation. Currently, it is assumed that Diplomystes species inhabit only Andean (large) basins, and that they are extinct from coastal (small) basins from which their presence have not been recorded since 1919. Here, we document new records of the family Diplomystidae in the Laraquete and Carampangue basins, two coastal basins from the Nahuelbuta Coast Range, Chile, with no previous reports. This finding represents the rediscovery of the genus in coastal basins in more than a...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Management Unit; Mitochondrial DNA; Rare Species; Streams; Threatened Species.
Ano: 2020 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252020000100208
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A new glanapterygine catfish of the genus Listrura (Siluriformes: Trichomycteridae) from southeastern Brazil, corroborated by morphological and molecular data Neotropical Ichthyology
Villa-Verde,Leandro; Lazzarotto,Henrique; Lima,Sergio M. Q..
Listrura costai, new species, is described from small streams in a swampy coastal plain in the rio Jurumirim basin, Angra dos Reis Municipality, Rio de Janeiro State, southeastern Brazil. The new species is morphologically very similar to L. nematopteryx and L. picinguabae, all possessing only one long pectoral-fin ray. It differs from its congeners by possessing an autapomorphic character: first hypobranchial with an anterior process (vs. process absent). Other features such as coloration, numbers of opercular and interopercular odontodes, number of anal-fin rays, head length, and shape of some bone structures help to distinguish the new species from L. nematopteryx and L. picinguabae. Molecular analyses using partial sequences of the mitochondrial DNA...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Atlantic rain forest; Genetic distance; Mitochondrial DNA; Taxonomy.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252012000300005
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A new species of Tetragonopterus Cuvier, 1816 (Characiformes: Characidae: Tetragonopterinae) from the rio Jari, Amapá, northern Brazil Neotropical Ichthyology
Melo,Bruno F; Benine,Ricardo C; Mariguela,Tatiane C; Oliveira,Claudio.
A new species of Tetragonopterus is described from the rio Jari, a tributary to the left margin of rio Amazonas, at the border between Amapá and Pará States, northern Brazil. It is morphologically diagnosed from the other species of the genus (T. argenteus, T. chalceus, and T. rarus new combination) by the lozenge-shaped spot on the caudal peduncle vs. rounded to square spot on the other species. Partial sequences of the mitochondrial gene Cytochrome Oxidase C subunit I, from representatives of all valid species of Tetragonopterus, including this new species, were analyzed. The obtained results revealed a significant genetic distance between the new species and its congeners. A discussion on the new combination, Tetragonopterus rarus, is also provided.
Tipo: Info:eu-repo/semantics/article Palavras-chave: COI gene; Genetic distance; Mitochondrial DNA; Neotropical fish; Taxonomy.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252011000100002
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A phylogenetic analysis of Brycon and Henochilus (Characiformes, Characidae, Bryconinae) based on the mitochondrial gene 16S rRNA Genet. Mol. Biol.
Hilsdorf,Silva; Oliveira,Claudio; Lima,Flávio César Thadeo de; Matsumoto,Cristianne Kayoko.
The genus Brycon, the largest subunit of the Bryconinae, has 42 valid species distributed from southern Mexico to the La Plata River in Argentina. Henochilus is a monotypic genus, comprising a single species (H. wheatlandii) found in the upper Rio Doce basin. In the present study, partial sequences of the mitochondrial gene 16S were obtained for fifteen species of Brycon and for Henochilus wheatlandii. The results showed that the genus Brycon is paraphyletic, since Henochilus is the sister-group of B. ferox and B. insignis. The most basal species analyzed were the trans-Andean species B. henni, B. petrosus, and B. chagrensis.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Phylogeny; Molecular systematics; Mitochondrial DNA; Fish evolution; Systematic.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000200034
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A recombination point is conserved in the mitochondrial genome of higher plant species and located downstream from the cox2 pseudogene in Solanum tuberosum L. Genet. Mol. Biol.
Tada,Susely F.S.; Souza,Anete P..
The potato (Solanum tuberosum L.) mitochondrial cox3/sdh4/pseudo-cox2 gene cluster has previously been identified by heterologous hybridization using a Marchantia polymorpha sdh4 probe. In our present study we used Southern blotting using sdh4 and cox2 probes to show that the sdh4 and cox2 genes are clustered in the mitochondria of potato, soybean and pea. Northern blotting revealed cotranscription of sdh4 and cox2 in potato but not in cauliflower, indicating that these genes are not clustered in cauliflower. A putative recombination point was detected downstream of the cox2 pseudogene (pseudo-cox2) in potato mitochondrial DNA (mtDNA). This sequence corresponds to a 32 bp sequence which appears to be well-conserved and is adjacent to the terminals of some...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Mitochondrial DNA; Rearrangement; Plants; Solanum tuberosum; Cox2.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572006000100017
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Challenges and prospects of population genetic studies in terns (Charadriiformes, Aves) Genet. Mol. Biol.
Faria,Patrícia J.; Baus,Erika; Morgante,João S.; Bruford,Michael W..
Little information is available about the population structure of communally nesting terns (Sternidae) and skimmers (Rynchopidae) throughout the world. In order to fill this gap, a survey of molecular markers was carried out for six species of terns (Anous stolidus, Sterna hirundinacea, S. fuscata, S. superciliaris, Thalasseus maximus and Phaetusa simplex) and one species of skimmer (Rynchops niger). First, we describe the results of the construction of genomic DNA libraries and document problems encountered during this procedure. Secondly, we tested the cross-amplification of 18 microsatellite loci previously described for related species (the number of polymorphic loci ranged from three to seven). Thirdly, we tested the usefulness of mtDNA (control...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Molecular markers; Microsatellites; Mitochondrial DNA; Terns.
Ano: 2007 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000400029
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Colombian Creole horse breeds: same origin but different diversity Genet. Mol. Biol.
Jimenez,Ligia Mercedes; Mendez,Susy; Dunner,Susana; Cañón,Javier; Cortés,Óscar.
In order to understand the genetic ancestry and mitochondrial DNA (mtDNA) diversity of current Colombian horse breeds we sequenced a 364-bp fragment of the mitocondrial DNA D-loop in 116 animals belonging to five Spanish horse breeds and the Colombian Paso Fino and Colombian Creole cattle horse breeds. Among Colombian horse breeds, haplogroup D had the highest frequency (53%), followed by haplogroups A (19%), C (8%) and F (6%). The higher frequency of haplogroup D in Colombian horse breeds supports the theory of an ancestral Iberian origin for these breeds. These results also indicate that different selective pressures among the Colombian breeds could explain the relatively higher genetic diversity found in the Colombian Creole cattle horse when compared...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Colombian; Creole cattle horse; Horse breeds; Mitochondrial DNA; Paso Fino horse breed.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000500013
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Color pattern variation in Cichla temensis (Perciformes: Cichlidae): resolution based on morphological, molecular, and reproductive data Neotropical Ichthyology
Reiss,Paul; Able,Kenneth W.; Nunes,Mario S.; Hrbek,Tomas.
Morphological variants of Cichla temensis, readily differentiated by their striking color pattern differences, are found in several Amazon basin flood pulse river systems. The adult variants have at times been thought to represent different species or sexual dimorphism. A three part study was performed in two regions in Brazil (rio Igapó Açú and rio Caures) to elucidate the nature of the variants. In part one; selected diagnostic morphometric characters were compared intraspecifically among the variants and interspecifically with C. monoculus and C. orinocensis. All of the C. temensis variants were found to differ significantly from their sympatric congeners while not differing among each other. In part two, mitochondrial DNA samples were compared...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Gonadosomatic index; Mitochondrial DNA; Neotropical fish; Secondary sexual characteristics.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252012000100006
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Comparative phylogeography of the western Indian Ocean reef fauna ArchiMer
Borsa, Philippe; Durand, Jean-dominique; Chen, Wei-jen; Hubert, Nicolas; Muths, Delphine; Mou-tham, Gerard; Kulbicki, Michel.
Assessing patterns of connectivity at the community and population levels is relevant to marine resource management and conservation. The present study reviews this issue with a focus on the western Indian Ocean (WIO) biogeographic province. This part of the Indian Ocean holds more species than expected from current models of global reef fish species richness. In this study, checklists of reef fish species were examined to determine levels of endemism in each of 10 biogeographic provinces of the Indian Ocean. Results showed that the number of endemic species was higher in the WIO than in any other region of the Indian Ocean. Endemic species from the WIO on the average had a larger body size than elsewhere in the tropical Indian Ocean. This suggests an...
Tipo: Text Palavras-chave: Indo-West Pacific; Biogeographic province; Endemism; Reef fish; Mitochondrial DNA; Parsimony network.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00288/39919/44195.pdf
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Cytogenetic and molecular analysis of the Pantaneiro cattle breed PAB
Issa,Érica Cunha; Jorge,Wilham; Sereno,José Robson Bezerra.
The objective of this work was to characterize Pantaneiro cattle genetically through its paternal ancestry by the morphology of the Y chromosome, whether submetacentric or acrocentric, as well as to identify the maternal ancestry through mitochondrial DNA. The karyotype and mitochondrial DNA of 12 bulls of Pantaneiro breed were analyzed. The Y chromosome was analyzed in lymphocyte metaphases and the mitochondrial DNA by diagnosing its haplotype (Bos taurus and Bos indicus). Among Pantaneiro animals analyzed three had a taurine (submetacentric) Y and nine had a zebuine (acrocentric) Y chromosome, suggesting breed contamination by Zebu cattle, once Pantaneiro is considered to be of European origin. The mitochondrial DNA was exclusively of taurine origin,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Bos taurus taurus; Bos taurus indicus; Y chromosome; Mitochondrial DNA.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2006001100006
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Demographic history of wood stork (Mycteria americana) Brazilian Pantanal colonies revealed by mitochondrial DNA analysis Genet. Mol. Biol.
Lopes,Iara Freitas; Brito,Reinaldo Alves de; Henrique-Silva,Flávio; Del Lama,Silvia Nassif.
We used mitochondrial DNA (mtDNA) sequences to investigate the demographic history of the wood stork (Mycteria americana) populations in the Brazilian Pantanal. Sequences of 390/460 bp fragment of the mtDNA control region were analyzed in 62 wood stork specimens from 8 colonies using neutrality tests, phylogeographic, and coalescent analyses. Population expansion was supported by the significantly negative values of Tajima’s (D = -2.071) and Fu’s (Fs = -14.544) statistics and the unimodal pattern of mismatch distribution. Nested clade analyses indicated a historic range expansion event and recurrent gene flow that was restricted by isolation by distance as explanations for the haplotype distribution among the sampled colonies. High genetic diversity and...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Wood stork; Mycteria americana; Pantanal; Mitochondrial DNA; Phylogeography.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572006000200008
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Diversité et différentiation génétiques des populations de tortues vertes (Chelonia mydas) dans les sites de ponte et d'alimentation du sud-ouest de l'océan Indien : application aux stratégies de conservation de l'espèce ArchiMer
Taquet, Coralie.
The green turtle (Chelonia mydas) is an emblematic species of marine life. However, nowadays it is subject to many threats (poaching, by-catch). Even if there is deep growing measures for its protection, the green turtle still is an endangered species and it is listed in Appendix I of Washington Convention (CITES). In order to elaborate efficient conservation and management plans, perfect knowledge of green turtle biology, but also of its population structure and their characteristics, are needed. In this thesis, we have assessed genetic structure of green turtle populations in the South-Western Indian Ocean by using genetic tools. In all, 1551 tissue samples have been collected from our study zone and from our control site French Polynesia (37 samples)....
Tipo: Text Palavras-chave: Management units; Microsatellites; Mitochondrial DNA; Foraging sites; Nesting sites; South Western Indian Ocean; Population genetics; Chelonia mydas; Green turtle; Unités de gestion (MUs); Microsatellites; ADN mitochondrial; Sites d'alimentation; Sites de ponte; Génétique des populations; Chelonia mydas; Tortue verte.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/these-3532.pdf
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D-loop haplotype diversity in Brazilian horse breeds. Repositório Alice
IANELLA, P.; ALBUQUERQUE, M. do S. M.; PAIVA, S. R.; EGITO, A. A. do; ALMEIDA, L. D.; SERENO, F. T. P. S.; CARVALHO, L. F. R.; MARIANTE, A. da S.; MCMANUS, C. M..
bitstream/item/165902/1/1415-4757-gmb-1678-4685-GMB-2016-01661.pdf
Tipo: Artigo em periódico indexado (ALICE) Palavras-chave: Genetic characterization; Locally adapted breeds; Mitochondrial DNA; Equus caballus; Animal genetic resources.
Ano: 2017 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1078580
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D-loop haplotype diversity in Brazilian horse breeds Genet. Mol. Biol.
Ianella,Patrícia; Albuquerque,Maria do Socorro Maués; Paiva,Samuel Rezende; Egito,Andréa Alves do; Almeida,Leonardo Daniel; Sereno,Fabiana T. P. S.; Carvalho,Luiz Felipe Ramos; Mariante,Arthur da Silva; McManus,Concepta Margaret.
Abstract The first horses were brought to Brazil by the colonizers after 1534. Over the centuries, these animals evolved and adapted to local environmental conditions usually unsuitable for exotic breeds, thereby originating locally adapted Brazilian breeds. The present work represents the first description of maternal genetic diversity in these horse breeds based on D-loop sequences. A D-Loop HSV-I fragment of 252 bp, from 141 horses belonging to ten Brazilian breeds / genetic groups (locally adapted and specialized breeds) were analysed. Thirty-five different haplotypes belonging to 18 haplogroups were identified with 33 polymorphic sites. Haplotype diversity (varying from 0.20 to 0.96) and nucleotide diversity (varying from 0.0039 to 0.0239) was lower...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Mitochondrial DNA; Genetic characterization; Equus caballus; Locally adapted breeds; Animal genetic resources.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572017000400604
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Genealogy of the nuclear β-fibrinogen intron 7 in Lissotriton boscai (Caudata, Salamandridae): concordance with mtDNA and implications for phylogeography and speciation Naturalis
Teixeira, J.; Martínez-Solano, I.; Buckley, D.; Tarroso, P.; García-París, M.; Ferrand, N..
The power of phylogeographic inference resides in its ability to integrate information from multiple sources in an iterative hypothesis-testing framework. In this paper, we build upon previous mtDNA-based hypotheses about the evolutionary history of the Iberian newt Lissotriton boscai using sequences of the highly variable nuclear β-fibrinogen intron 7. In addition to the nuclear sequences, we produced new mtDNA data across the species range to delineate contact zones and test the congruence between nuclear and mitochondrial datasets at the same level of spatial organization. Through a combination of phylogenetic, phylogeographic continuous diffusion, and genetic landscape modelling analyses, we infer the evolutionary history of the species. We found...
Tipo: Article / Letter to the editor Palavras-chave: Β-fibint7; Genetic landscape shape; Iberian Peninsula; Mitochondrial DNA; Nuclear DNA; 42.82; 42.64.
Ano: 2015 URL: http://www.repository.naturalis.nl/record/578951
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Genetic differences between Chibcha and Non-Chibcha speaking tribes based on mitochondrial DNA (mtDNA) haplogroups from 21 Amerindian tribes from Colombia Genet. Mol. Biol.
Usme-Romero,Solangy; Alonso,Milena; Hernandez-Cuervo,Helena; Yunis,Emilio J.; Yunis,Juan J..
We analyzed the frequency of four mitochondrial DNA haplogroups in 424 individuals from 21 Colombian Amerindian tribes. Our results showed a high degree of mtDNA diversity and genetic heterogeneity. Frequencies of mtDNA haplogroups A and C were high in the majority of populations studied. The distribution of these four mtDNA haplogroups from Amerindian populations was different in the northern region of the country compared to those in the south. Haplogroup A was more frequently found among Amerindian tribes in northern Colombia, while haplogroup D was more frequent among tribes in the south. Haplogroups A, C and D have clinal tendencies in Colombia and South America in general. Populations belonging to the Chibcha linguistic family of Colombia and other...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Mitochondrial DNA; Amerindian; Colombia; Chibcha; Genetic relationships.
Ano: 2013 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572013000200003
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Genetic differentiation in populations of Aedes aegypti (Diptera, Culicidae) dengue vector from the Brazilian state of Maranhão Rev. Bras. entomol.
Sousa,Andrelina Alves de; Fraga,Elmary; Sampaio,Iracilda; Schneider,Horacio; Barros,Maria Claudene.
ABSTRACT Aedes (Stegomyia) aegypti is the vector responsible for the transmission of the viruses that cause zika, yellow and chikungunya fevers, the four dengue fever serotypes (DENV - 1, 2, 3, 4), and hemorrhagic dengue fever in tropical and subtropical regions around the world. The present study investigated the genetic differentiation of the 15 populations of this vector in the Brazilian state of Maranhão, based on the mitochondrial ND4 marker. A total of 177 sequences were obtained for Aedes aegypti, with a fragment of 337 bps, 15 haplotypes, 15 polymorphics sites, haplotype diversity of h = 0.6938, and nucleotide diversity of π = 0.01486. The neutrality tests (D and Fs) were not significant. The AMOVA revealed that most of the variation (58.47%) was...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Gene flow; Mitochondrial DNA; ND4.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262017000100051
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Genetic Diversity and Phyletic Evolution of Eleven Chinese Indigenous and Three Commercial Chicken Breeds by mtDNA Sequences Rev. Bras. Ciênc. Avic.
Yu,C; Qiu,M; Jiang,X; Zhang,Z; Du,H; Li,Q; Xia,B; Song,X; Hu,C; Xiong,X; Yang,L; Peng,H; Chen,J; Wang,Y; Yang,C.
ABSTRACT Chinese indigenous chicken breeds are geographically widespread, and a total of 116 indigenous chicken breeds are listed as Chinese national genetic resources. However, these indigenous chicken breeds are facing serious challenges as declining population and germplasm degeneration because lots of commercial chicken breeds had been introduced. In this study, the genetic variations of eleven Chinese indigenous chicken breeds of Sichuan province and three commercial chicken breeds were investigated based on the partial mitochondrial DNA D-loop of 487bp in length. 147 individuals from 14 breeds were examined and 34 haplotypes were observed. Genetic diversity analysis showed that the highest haplotype diversity level was found in Dahen Chicken (DH)...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chinese chicken; Mitochondrial DNA; Cluster analysis; Gene flow; Phylogeny.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-635X2019000400308
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Genetic diversity of the Brazilian Creole cattle Pé-duro assessed by microsatellites and mitochondrial DNA R. Bras. Zootec.
Oliveira,Ana Paula Ferreira de; Carvalho,José Herculano de; Miretti,Marcos Mateo; Lara,Maria Aparecida Cassiano; Contel,Eucleia Primo Betioli.
The objective of this study was to describe the genetic diversity and structure of the largest Pé-duro population by assessing variation at ten autosomal microsatellite (STR) loci and mitochondrial DNA (mtDNA) sequences. The mean expected heterozygosity was 0.755, the mean observed heterozygosity was 0.600 and significant inbreeding coefficient (Fis) and deviations from the Hardy-Weinberg equilibrium in most of analyzed loci demonstrate the impact of inbreeding and homozygosis on this population. A more in-depth genetic analysis could be achieved by expanding the STR list. The analysis of mtDNA provided evidence of ancestral African taurine haplotypes in Pé-duro and excluded maternal Zebuine introgression. In this report, the main Pé-duro population is...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Bos taurus; Cattle; Conservation; Genetic diversity; Microsatellites; Mitochondrial DNA.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-35982012001100003
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Genetic frequencies related to severe or profound sensorineural hearing loss in Inner Mongolia Autonomous Region Genet. Mol. Biol.
Liu,Yongzhi; Ao,Liying; Ding,Haitao; Zhang,Dongli.
Abstract The aim was to study the frequencies of common deafness-related mutations and their contribution to hearing loss in different regions of Inner Mongolia. A total of 738 deaf children were recruited from five different ethnic groups of Inner Mongolia, including Han Chinese (n=486), Mongolian (n=216), Manchurian (n=24), Hui (n=6) and Daur (n=6). Nine common mutations in four genes (GJB2, SLC26A4, GJB3 and mitochondrial MT-RNR1 gene) were detected by allele-specific PCR and universal array. At least one mutated allele was detected in 282 patients. Pathogenic mutations were detected in 168 patients: 114 were homozygotes and 54 were compound heterozygotes. The 114 patients were carriers of only one mutated allele. The frequency of GJB2 variants in Han...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Sensorineural hearing loss; GJB2; SLC26A4; GJB3; Mitochondrial DNA; Inner Mongolia.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000400567
Registros recuperados: 76
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